Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003731`

染色体: Chr02 坐标: 58942849-58948155 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003731`
名称	SmilChr02G003731
描述	uncharacterized SmilChr02G003731
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	58942849 - 58948155 / `-`

ID 对照

NCBI Gene ID	`LOC131010675`
GeneID	`131010675`
locus_tag	`-`
NCBI Name	`LOC131010675`
原始查询	`SmilChr02G003731`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os11g0307600; species=rice; confidence=weak
产物	hit=Os11g0307600; species=rice; confidence=weak
Arabidopsis	`-` -
Rice	`Os11g0307600` - identity=22.9; qcov=0.286; evalue=3.39e-12; confidence=weak
GO	GO:0006508 (proteolysis); GO:0008234 (cysteine-type peptidase activity)
KEGG	-
Pfam	PF02902 (Peptidase_C48); PF29561 (DUF8566)
InterPro	-
eggNOG	-
NR	GeneID:131010675

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794310.1`
2	Chromosome	染色体	0.80000	`XP_057794314.1`
3	Telomere	端粒	0.20000	`XP_057794310.1`
4	Centromere	着丝粒	0.00000	`XP_057794310.1`
5	Chromatin	染色质	0.00000	`XP_057794310.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:58943099`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C38
`Chr2:58943123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D8
`Chr2:58943167`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:58943213`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C60,D11
`Chr2:58943260`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B74
`Chr2:58943304`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A14,B34,B85,C73
`Chr2:58943359`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:58943550`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B43,B71
`Chr2:58943599`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A4,B69,B75
`Chr2:58943601`	`G`	`GA`	1bp_insertion	frameshift_variant	2	C18,C37
`Chr2:58943601`	`G`	`GA`	1bp_insertion	CDS_variant	2	C18,C37
`Chr2:58943911`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,C44,C62

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794310.1

897 aa

448

897

DUF8566

Peptidase_C48

PF29561 DUF8566 110-310 aa PF02902 Peptidase_C48 706-836 aa

XP_057794311.1

896 aa

448

896

DUF8566

Peptidase_C48

PF29561 DUF8566 110-310 aa PF02902 Peptidase_C48 705-835 aa

XP_057794312.1

875 aa

438

875

DUF8566

Peptidase_C48

PF29561 DUF8566 110-310 aa PF02902 Peptidase_C48 684-814 aa

XP_057794313.1

874 aa

437

874

DUF8566

Peptidase_C48

PF29561 DUF8566 110-310 aa PF02902 Peptidase_C48 683-813 aa

XP_057794314.1

781 aa

390

781

DUF8566

PF29561 DUF8566 110-310 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794310.1`	Pfam	`PF29561`	DUF8566	Domain	110	310	1.6e-46	159.4	Domain of unknown function (DUF8566)
`XP_057794310.1`	Pfam	`PF02902`	Peptidase_C48	Domain	706	836	1.3e-05	25.9	Ulp1 protease family, C-terminal catalytic domain
`XP_057794311.1`	Pfam	`PF29561`	DUF8566	Domain	110	310	1.6e-46	159.4	Domain of unknown function (DUF8566)
`XP_057794311.1`	Pfam	`PF02902`	Peptidase_C48	Domain	705	835	1.3e-05	25.9	Ulp1 protease family, C-terminal catalytic domain
`XP_057794312.1`	Pfam	`PF29561`	DUF8566	Domain	110	310	1.5e-46	159.4	Domain of unknown function (DUF8566)
`XP_057794312.1`	Pfam	`PF02902`	Peptidase_C48	Domain	684	814	1.3e-05	25.9	Ulp1 protease family, C-terminal catalytic domain
`XP_057794313.1`	Pfam	`PF29561`	DUF8566	Domain	110	310	1.5e-46	159.4	Domain of unknown function (DUF8566)
`XP_057794313.1`	Pfam	`PF02902`	Peptidase_C48	Domain	683	813	1.3e-05	25.9	Ulp1 protease family, C-terminal catalytic domain
`XP_057794314.1`	Pfam	`PF29561`	DUF8566	Domain	110	310	1.3e-46	159.7	Domain of unknown function (DUF8566)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XR_009096637.1
TTGGGTTGTATTTATGGAATCCTAATCAAATATCGGTTTTATCTCACTTTCCTTGTAGAGATATCAGTTACATTGTAGATGAGGATGCCTTCAGAGTTCAACGAATTTCTTCCACAATTCTATTCATTGTTTATTAAGTTTTCATATTTGTTCCATATTCCTGACAACATACGAGAAGAACAAGATGGATCGTCAACAAGAAACAGATGCGGCCACATCTAATTCCATATCGCCAGACAAAAAGAGGACGAAAGTTACAA...

XM_057938327.1
AGAAGGAATCTGGAGCGTCTGTTTCATCTCATCCAACGCTCAAGATTTAATCCCGTTCAAGAGTTTTGCAATTCCAAAATATGCGATATTCTTGAATTTATAAGCTAGATATCAGTTACATTGTAGATGAGGATGCCTTCAGAGTTCAACGAATTTCTTCCACAATTCTATTCATTGTTTATTAAGTTTTCATATTTGTTCCATATTCCTGACAACATACGAGAAGAACAAGATGGATCGTCAACAAGAAACAGATGCGG...

CDS

5 records

下载 CDS FASTA

LOC131010675
ATGGATCGTCAACAAGAAACAGATGCGGCCACATCTAATTCCATATCGCCAGACAAAAAGAGGACGAAAGTTACAAATCCCCGGCTTTCTTTAAGTGATAAAGGAAAGACAAAGGCTTCGTTTGTTCCGTTTGTGTATGGGTCATTATCTGTAGGAGCAAAACGGAACGTGAACAGGGACATAAAACCGACAGTTCCAAGAATGCCATCAACTAATGTAATTGACTTGACAACTCCAGATAGCGTTCGATGCTTCCAATC...

Protein

5 records

下载 Protein FASTA

XP_057794310.1
MDRQQETDAATSNSISPDKKRTKVTNPRLSLSDKGKTKASFVPFVYGSLSVGAKRNVNRDIKPTVPRMPSTNVIDLTTPDSVRCFQSEAKPHITKVYARRKHKGPSLNLRTTPAAFHDALKKLNDAQKSAVRDIGFGRLLELKVKDIPARLAYWVQNKFNPETCELEIDARRRVAVTQGDVYRIFGFPCGNQSIKIFERKSNSDLFEQWFSFFGVENRDKIKIGLVLDVMLGCKCGGTWFKRHFMIAMGFSLFESYPTGT...

XP_057794311.1
MDRQQETDAATSNSISPDKKRTKVTNPRLSLSDKGKTKASFVPFVYGSLSVGAKRNVNRDIKPTVPRMPSTNVIDLTTPDSVRCFQSEAKPHITKVYARRKHKGPSLNLRTTPAAFHDALKKLNDAQKSAVRDIGFGRLLELKVKDIPARLAYWVQNKFNPETCELEIDARRRVAVTQGDVYRIFGFPCGNQSIKIFERKSNSDLFEQWFSFFGVENRDKIKIGLVLDVMLGCKCGGTWFKRHFMIAMGFSLFESYPTGT...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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