当前解析结果
SmilChr02G003753| 统一新 Gene ID | SmilChr02G003753 |
|---|---|
| 名称 | SmilChr02G003753 |
| 描述 | proteinaceous RNase P 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59167246 - 59170730 / - |
| NCBI Gene ID | LOC131010685 |
|---|---|
| GeneID | 131010685 |
| locus_tag | - |
| NCBI Name | LOC131010685 |
| 原始查询 | SmilChr02G003753 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | proteinaceous RNase P 2-like |
| 产物 | proteinaceous RNase P 2-like |
| Arabidopsis | AT4G21900 (PRORP3)proteinaceous RNase P 3 [Source:NCBI gene (formerly Entrezgene);Acc:828279] identity=54.8; qcov=0.976; evalue=0; confidence=high |
| Rice | Os02g0273800 (P0413A11.14-1)- identity=47; qcov=0.832; evalue=4.69e-124; confidence=high |
| GO | GO:0001682 (tRNA 5'-leader removal); GO:0004526 (ribonuclease P activity); GO:0005515 (protein binding) |
| KEGG | - |
| Pfam | PF11977 (RNase_Zc3h12a); PF16953 (PRORP); PF17177 (PPR_long); PF23276 (TPR_24) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010685 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 0.80000 | XP_057794326.1 |
| 2 | Nucleolus | 核仁 | 0.20000 | XP_057794326.1 |
| 3 | Cytoplasm | 细胞质 | 0.20000 | XP_057794326.1 |
| 4 | Cytosol | 细胞质基质 | 0.20000 | XP_057794326.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794326.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59167749 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B73 |
Chr2:59168030 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C29,C6 |
Chr2:59168069 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,A20,B79,C43 |
Chr2:59169401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B97 |
Chr2:59169505 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B16 |
Chr2:59169523 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | C29,C6,D10 |
Chr2:59169556 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C29,D10 |
Chr2:59169685 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B70,C87 |
Chr2:59170159 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B103,C33 |
Chr2:59170171 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B49 |
Chr2:59170301 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A24,B102 |
Chr2:59170533 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794326.1PF17177
PPR_long 7-213 aa
PF23276
TPR_24 94-205 aa
PF16953
PRORP 256-481 aa
PF11977
RNase_Zc3h12a 313-440 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794326.1 |
Pfam | PF17177 |
PPR_long | Repeat | 7 | 213 | 2.3e-67 | 227.2 | Pentacotripeptide-repeat region of PRORP |
XP_057794326.1 |
Pfam | PF23276 |
TPR_24 | Repeat | 94 | 205 | 1.3e-05 | 25.8 | Pentatricopeptide repeat-containing protein |
XP_057794326.1 |
Pfam | PF16953 |
PRORP | Domain | 256 | 481 | 1.5e-61 | 208.8 | Protein-only RNase P |
XP_057794326.1 |
Pfam | PF11977 |
RNase_Zc3h12a | Domain | 313 | 440 | 8.2e-08 | 32.8 | Zc3h12a-like Ribonuclease NYN domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。