Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003758`

染色体: Chr02 坐标: 59230727-59236132 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003758`
名称	SmilChr02G003758
描述	calcium-transporting ATPase 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	59230727 - 59236132 / `+`

ID 对照

NCBI Gene ID	`LOC131010674`
GeneID	`131010674`
locus_tag	`-`
NCBI Name	`LOC131010674`
原始查询	`SmilChr02G003758`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	calcium-transporting ATPase 1
产物	calcium-transporting ATPase 1
Arabidopsis	`AT1G27770` (ACA1) autoinhibited Ca2+-ATPase 1 [Source:NCBI gene (formerly Entrezgene);Acc:839670] identity=77.8; qcov=1; evalue=0; confidence=high
Rice	`Os12g0586600` (osACA2) - identity=77.2; qcov=1; evalue=0; confidence=high
GO	GO:0005388 (P-type calcium transporter activity); GO:0005516 (calmodulin binding); GO:0005524 (ATP binding); GO:0016020 (membrane); GO:0016887 (ATP hydrolysis activity); GO:0043231 (intracellular membrane-bounded organelle); GO:0070588 (calcium ion transmembrane transport)
KEGG	-
Pfam	PF00122 (E1-E2_ATPase); PF00689 (Cation_ATPase_C); PF00690 (Cation_ATPase_N); PF00702 (Hydrolase); PF12515 (CaATP_NAI); PF13246 (Cation_ATPase)
InterPro	-
eggNOG	-
NR	GeneID:131010674

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794309.1`
2	Vacuole	液泡	0.40000	`XP_057794309.1`
3	Nucleus	细胞核	0.00000	`XP_057794309.1`
4	Chromosome	染色体	0.00000	`XP_057794309.1`
5	Centromere	着丝粒	0.00000	`XP_057794309.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:59231185`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:59232040`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:59232220`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B34,B47,B78,C63
`Chr2:59232301`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A20
`Chr2:59232331`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:59232640`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:59233555`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B107,B140
`Chr2:59233858`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B32
`Chr2:59234269`	`C`	`CT`	1bp_insertion	frameshift_variant	5	B104,B111,B113,C69,C7
`Chr2:59234269`	`C`	`CT`	1bp_insertion	CDS_variant	5	B104,B111,B113,C69,C7
`Chr2:59235499`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:59235744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C16

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794309.1

1015 aa

508

1015

CaATP_NAI

Cation_ATPase_N

E1-E2_ATPase

Cation_ATPase

Hydrolase

Cation_ATPase_C

PF12515 CaATP_NAI 6-49 aa PF00690 Cation_ATPase_N 113-181 aa PF00122 E1-E2_ATPase 232-330 aa PF13246 Cation_ATPase 511-658 aa PF00702 Hydrolase 625-765 aa PF00689 Cation_ATPase_C 836-1010 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794309.1`	Pfam	`PF12515`	CaATP_NAI	Family	6	49	2.8e-22	78.6	Ca2+-ATPase N terminal autoinhibitory domain
`XP_057794309.1`	Pfam	`PF00690`	Cation_ATPase_N	Domain	113	181	1.2e-13	51.2	Cation transporter/ATPase, N-terminus
`XP_057794309.1`	Pfam	`PF00122`	E1-E2_ATPase	Domain	232	330	1.1e-21	77.3	P-type ATPase actuator domain
`XP_057794309.1`	Pfam	`PF13246`	Cation_ATPase	Family	511	658	1.8e-33	116.6	P-type ATPase, cytoplasmic domain N
`XP_057794309.1`	Pfam	`PF00702`	Hydrolase	Domain	625	765	5.9e-14	53.6	haloacid dehalogenase-like hydrolase
`XP_057794309.1`	Pfam	`PF00689`	Cation_ATPase_C	Family	836	1010	1.1e-43	149.8	Cation transporting ATPase, C-terminus

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938326.1
TTGATCCTTTACAGTCGGAATTTTGTGAGAAACTTTAAGAAAAGAATGCTTGTCCGAGAACTTTGAATCTCAAGTTATGAGTTGACTCTAATGGTGGACCAGTTCAAAATATCTATCCTGCCTTGTAAGAGAAACATATTCTCACGTTCTTCCCATGCTCTGACGACTGCGCTCTCCATTTCCCTAAAATTTCCAACCATCTTCGTTTCCTAGTATTATACTCCTATACAAGGGTTCCATTTCTTCTACCCACTCCTTTT...

CDS

1 records

下载 CDS FASTA

LOC131010674
ATGGCAAGCTATTTGAAGGATTTCTCGGACGTCAAGCCGAAGAACTCGTCCGAGGAGGCGCTGCAGCGGTGGCGCAAAGCCTGCTGGCTGGTGAAGAATCGGAAGAGGAGGTTTCGCTTTACAGCTAATTTGTCCAAGCGTTTCGAAGTTCGCGAGATCCAGAAGTCCAATCAGGAGAAGCTTAGAGTTGCAGTGTTAGTTTCCCAAGCTGCACTTAGTTTTATTAAGGGTATAAGTTACAGTGTTCCCGAGAATGTCAA...

Protein

1 records

下载 Protein FASTA

XP_057794309.1
MASYLKDFSDVKPKNSSEEALQRWRKACWLVKNRKRRFRFTANLSKRFEVREIQKSNQEKLRVAVLVSQAALSFIKGISYSVPENVKGAGFEIDADELGSIVEGHNVRKLKVHGGVEGLVGKLSTSVTNGINNSEEALNRRREVYGINKFLESPAKGFWLFVWEALQDTTLMILAVCAVVSLIVGIATEGWPKGAHDGLGIVASILLVVFVTATSDYKQSLQFKDLDKEKKKITVQVTRNGYRQKISIFDLLAGDIVHLA...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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