当前解析结果
SmilChr02G003759| 统一新 Gene ID | SmilChr02G003759 |
|---|---|
| 名称 | SmilChr02G003759 |
| 描述 | transcription factor MYB98-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59239360 - 59240873 / + |
| NCBI Gene ID | LOC131009812 |
|---|---|
| GeneID | 131009812 |
| locus_tag | - |
| NCBI Name | LOC131009812 |
| 原始查询 | SmilChr02G003759 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor MYB98-like |
| 产物 | transcription factor MYB98-like |
| Arabidopsis | AT4G18770 (MYB98)myb domain protein 98 [Source:NCBI gene (formerly Entrezgene);Acc:827611] identity=47.7; qcov=0.535; evalue=5.38e-39; confidence=medium |
| Rice | Os01g0855400- identity=51.1; qcov=0.479; evalue=4.48e-37; confidence=medium |
| GO | GO:0000978 (RNA polymerase II cis-regulatory region sequence-specific DNA binding); GO:0000981 (DNA-binding transcription factor activity, RNA polymerase II-specific); GO:0005634 (nucleus); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | PF00249 (Myb_DNA-binding); PF13921 (Myb_DNA-bind_6) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009812 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793202.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057793202.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057793202.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057793202.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057793202.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59239500 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B136,B19,C83,D4 |
Chr2:59239522 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B74 |
Chr2:59239824 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B126,D7 |
Chr2:59239891 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B49,B60,B79,C27 |
Chr2:59240387 |
A |
AT |
1bp_insertion | stop_gained,frameshift_variant | 1 | B104 |
Chr2:59240387 |
A |
AT |
1bp_insertion | CDS_variant | 1 | B104 |
Chr2:59240467 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B107 |
Chr2:59240511 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,B86 |
Chr2:59240689 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B70,C87,D11 |
Chr2:59240803 |
C |
CGG |
2bp_insertion | frameshift_variant | 35 | A13,A2,B112,B12,B121,B127,B130,B139,B14,B22,B37,B4,B40,B44,B50,B52,B54,B81,B87,B89,B97,C10,C22,C35,C36,C40,C42,C53,C57,C63,C76,C78,C86,D4,D8 |
Chr2:59240870 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A9,B98,D7 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793202.1PF00249
Myb_DNA-binding 66-112 aa
PF13921
Myb_DNA-bind_6 69-119 aa
PF00249
Myb_DNA-binding 122-162 aa
PF13921
Myb_DNA-bind_6 122-163 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793202.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 66 | 112 | 2.4e-31 | 108.3 | Myb-like DNA-binding domain |
XP_057793202.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 69 | 119 | 7.3e-25 | 87.7 | Myb-like DNA-binding domain |
XP_057793202.1 |
Pfam | PF00249 |
Myb_DNA-binding | Domain | 122 | 162 | 2.4e-31 | 108.3 | Myb-like DNA-binding domain |
XP_057793202.1 |
Pfam | PF13921 |
Myb_DNA-bind_6 | Domain | 122 | 163 | 7.3e-25 | 87.7 | Myb-like DNA-binding domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。