当前解析结果
SmilChr02G003774| 统一新 Gene ID | SmilChr02G003774 |
|---|---|
| 名称 | SmilChr02G003774 |
| 描述 | protein arginine N-methyltransferase 2-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59434046 - 59436114 / - |
| NCBI Gene ID | LOC131010696 |
|---|---|
| GeneID | 131010696 |
| locus_tag | - |
| NCBI Name | LOC131010696 |
| 原始查询 | SmilChr02G003774 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein arginine N-methyltransferase 2-like |
| 产物 | protein arginine N-methyltransferase 2-like |
| Arabidopsis | AT5G65860 (AT5G65860)ankyrin repeat family protein [Source:NCBI gene (formerly Entrezgene);Acc:836715] identity=71.6; qcov=0.985; evalue=0; confidence=high |
| Rice | Os03g0761200- identity=70.6; qcov=0.982; evalue=8.27e-174; confidence=high |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016274 (protein-arginine N-methyltransferase activity) |
| KEGG | - |
| Pfam | PF00023 (Ank); PF12796 (Ank_2); PF13606 (Ank_3); PF13637 (Ank_4); PF13857 (Ank_5); PF27704 (GuanidinoAc_N-MeTrfase) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010696 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057794342.1 |
| 2 | Cytosol | 细胞质基质 | 1.00000 | XP_057794342.1 |
| 3 | Nucleus | 细胞核 | 0.80000 | XP_057794342.1 |
| 4 | Nucleoplasm | 核质 | 0.20000 | XP_057794342.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794342.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59434368 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B51,C47 |
Chr2:59434389 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B82 |
Chr2:59434389 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B82 |
Chr2:59434665 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A14,B80,C29,C43 |
Chr2:59434702 |
AT |
A |
1bp_deletion | frameshift_variant | 1 | C37 |
Chr2:59434702 |
AT |
A |
1bp_deletion | CDS_variant | 1 | C37 |
Chr2:59434731 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B64 |
Chr2:59434732 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A14,C33,C43 |
Chr2:59434818 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B140,C12 |
Chr2:59434879 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B108 |
Chr2:59435694 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C29 |
Chr2:59435764 |
GC |
G |
1bp_deletion | frameshift_variant | 1 | C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794342.1PF13637
Ank_4 9-58 aa
PF12796
Ank_2 9-96 aa
PF13857
Ank_5 24-74 aa
PF13606
Ank_3 38-65 aa
PF00023
Ank 38-66 aa
PF27704
GuanidinoAc_N-MeTrfase 128-260 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794342.1 |
Pfam | PF13637 |
Ank_4 | Repeat | 9 | 58 | 9.8e-10 | 39.2 | Ankyrin repeats (many copies) |
XP_057794342.1 |
Pfam | PF12796 |
Ank_2 | Repeat | 9 | 96 | 5.4e-12 | 46.8 | Ankyrin repeats (3 copies) |
XP_057794342.1 |
Pfam | PF13857 |
Ank_5 | Repeat | 24 | 74 | 4.7e-08 | 33.9 | Ankyrin repeats (many copies) |
XP_057794342.1 |
Pfam | PF13606 |
Ank_3 | Repeat | 38 | 65 | 9.5e-07 | 29.3 | Ankyrin repeat |
XP_057794342.1 |
Pfam | PF00023 |
Ank | Repeat | 38 | 66 | 4.8e-10 | 39.9 | Ankyrin repeat |
XP_057794342.1 |
Pfam | PF27704 |
GuanidinoAc_N-MeTrfase | Domain | 128 | 260 | 3.4e-19 | 69.9 | Guanidinoacetate N-methyltransferase |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。