Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003822`

染色体: Chr02 坐标: 59837375-59843116 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003822`
名称	SmilChr02G003822
描述	pumilio homolog 23
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	59837375 - 59843116 / `+`

ID 对照

NCBI Gene ID	`LOC131010765`
GeneID	`131010765`
locus_tag	`-`
NCBI Name	`LOC131010765`
原始查询	`SmilChr02G003822`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	pumilio homolog 23
产物	pumilio homolog 23
Arabidopsis	`AT1G72320` (PUM23) pumilio 23 [Source:NCBI gene (formerly Entrezgene);Acc:843564] identity=50.8; qcov=0.966; evalue=0; confidence=high
Rice	`Os10g0390100` - identity=50.8; qcov=0.754; evalue=0; confidence=high
GO	GO:0000056 (ribosomal small subunit export from nucleus); GO:0000447 (endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000472 (endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0000480 (endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)); GO:0003723 (RNA binding); GO:0005730 (nucleolus); GO:0030686 (90S preribosome); GO:0030688 (preribosome, small subunit precursor)
KEGG	-
Pfam	PF00806 (PUF); PF22493 (PUF_NOP9)
InterPro	-
eggNOG	-
NR	GeneID:131010765

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794414.1`
2	Nucleolus	核仁	1.00000	`XP_057794414.1`
3	Chromosome	染色体	0.00000	`XP_057794414.1`
4	Centromere	着丝粒	0.00000	`XP_057794414.1`
5	Chromatin	染色质	0.00000	`XP_057794414.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:59838116`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B102,C75
`Chr2:59838169`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,B109,B34
`Chr2:59838478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B102
`Chr2:59838520`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:59838535`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:59838552`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B15
`Chr2:59838656`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C12
`Chr2:59839082`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B118
`Chr2:59839209`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C47,C74
`Chr2:59840432`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B104
`Chr2:59841303`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B20,B70,C87
`Chr2:59841317`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794414.1

784 aa

392

784

PUF_NOP9

PUF

PF22493 PUF_NOP9 132-618 aa PF00806 PUF 219-238 aa PF00806 PUF 394-424 aa PF00806 PUF 586-606 aa

XP_057794415.1

760 aa

380

760

PUF_NOP9

PUF

PF22493 PUF_NOP9 108-594 aa PF00806 PUF 195-214 aa PF00806 PUF 370-400 aa PF00806 PUF 562-582 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794414.1`	Pfam	`PF22493`	PUF_NOP9	Repeat	132	618	2e-65	222.4	NOP9-like PUF repeat domain
`XP_057794414.1`	Pfam	`PF00806`	PUF	Repeat	219	238	6.3e-11	42.5	Pumilio-family RNA binding repeat
`XP_057794414.1`	Pfam	`PF00806`	PUF	Repeat	394	424	6.3e-11	42.5	Pumilio-family RNA binding repeat
`XP_057794414.1`	Pfam	`PF00806`	PUF	Repeat	586	606	6.3e-11	42.5	Pumilio-family RNA binding repeat
`XP_057794415.1`	Pfam	`PF22493`	PUF_NOP9	Repeat	108	594	1.8e-65	222.5	NOP9-like PUF repeat domain
`XP_057794415.1`	Pfam	`PF00806`	PUF	Repeat	195	214	5e-11	42.8	Pumilio-family RNA binding repeat
`XP_057794415.1`	Pfam	`PF00806`	PUF	Repeat	370	400	5e-11	42.8	Pumilio-family RNA binding repeat
`XP_057794415.1`	Pfam	`PF00806`	PUF	Repeat	562	582	5e-11	42.8	Pumilio-family RNA binding repeat

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009096652.1
TAATCATAATTTAATTGAGCCCTAATTCCCCTTCTCACTCTTATGCTTGTTGAGCCCTAATTCCCCTTCTCCTTCTTTTATCCTTCTTGAGCCCTAATTCCCCTTCTCCCTCGTCTGCATCTTCAATTCCAGAGTTTGGGGACGCAGCAGCAGATTCAAGAAAAGGGCTCAGTGTGTTGGAGAGGCTGGTATGGTGTCTATTGGTTTGAGAGCATTGGCATTGAGAAACCATAAATCACACAATTTATCTCAGGACGGCT...

XR_009096653.1
TAATCATAATTTAATTGAGCCCTAATTCCCCTTCTCACTCTTATGCTTGTTGAGCCCTAATTCCCCTTCTCCTTCTTTTATCCTTCTTGAGCCCTAATTCCCCTTCTCCCTCGTCTGCATCTTCAATTCCAGAGTTTGGGGACGCAGCAGCAGATTCAAGAAAAGGACGGCTTGATGATGGGCGAAGGTAAAACTTCGTATGATGATGTTGGTAAACGGAGGAAAATGGGCAGGAAAGGAAGCAAGAAAGAAAGTGGATT...

CDS

2 records

下载 CDS FASTA

LOC131010765
ATGGTGTCTATTGGTTTGAGAGCATTGGCATTGAGAAACCATAAATCACACAATTTATCTCAGGACGGCTTGATGATGGGCGAAGGTAAAACTTCGTATGATGATGTTGGTAAACGGAGGAAAATGGGCAGGAAAGGAAGCAAGAAAGAAAGTGGATTTCATCGGAATGATTCAAACAAGAATGAATCCGGTGGTGCATCAGGTGCTACAGGAAGAGCTCAGAGTTTTTCACAGGACAAGGGAGGATCAGTATCTCAGGC...

LOC131010765
ATGATGGGCGAAGGTAAAACTTCGTATGATGATGTTGGTAAACGGAGGAAAATGGGCAGGAAAGGAAGCAAGAAAGAAAGTGGATTTCATCGGAATGATTCAAACAAGAATGAATCCGGTGGTGCATCAGGTGCTACAGGAAGAGCTCAGAGTTTTTCACAGGACAAGGGAGGATCAGTATCTCAGGCGTCATTTGTCAGAAAGCAGGTCGATCCAGAGACGGCTAAGTACTTCTCGGAGATTACAAATGTAATAGAAGG...

Protein

2 records

下载 Protein FASTA

XP_057794414.1
MVSIGLRALALRNHKSHNLSQDGLMMGEGKTSYDDVGKRRKMGRKGSKKESGFHRNDSNKNESGGASGATGRAQSFSQDKGGSVSQASFVRKQVDPETAKYFSEITNVIEGTEVDVEERSVICGTALEEARGKEVELATDYIISHTMQTLLEGCSLDRLCSFLRSSADEFSQICMDRSGSHVAETALKSLARHLEDDESHSLITETLSVLCEAIVADPVEIMCNCYGSHVLRRLLCLCKGVPMDSLEFHSTNPSVVLAER...

XP_057794415.1
MMGEGKTSYDDVGKRRKMGRKGSKKESGFHRNDSNKNESGGASGATGRAQSFSQDKGGSVSQASFVRKQVDPETAKYFSEITNVIEGTEVDVEERSVICGTALEEARGKEVELATDYIISHTMQTLLEGCSLDRLCSFLRSSADEFSQICMDRSGSHVAETALKSLARHLEDDESHSLITETLSVLCEAIVADPVEIMCNCYGSHVLRRLLCLCKGVPMDSLEFHSTNPSVVLAERLNLRSSHVDGHKTLQNQPFPDQLK...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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