当前解析结果
SmilChr02G003823| 统一新 Gene ID | SmilChr02G003823 |
|---|---|
| 名称 | SmilChr02G003823 |
| 描述 | transcription factor TGA4-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 59887890 - 59889453 / + |
| NCBI Gene ID | LOC131009823 |
|---|---|
| GeneID | 131009823 |
| locus_tag | - |
| NCBI Name | LOC131009823 |
| 原始查询 | SmilChr02G003823 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | transcription factor TGA4-like |
| 产物 | transcription factor TGA4-like |
| Arabidopsis | AT5G10030 (TGA4)TGACG motif-binding factor 4 [Source:NCBI gene (formerly Entrezgene);Acc:830866] identity=63.5; qcov=0.98; evalue=3.36e-33; confidence=medium |
| Rice | Os04g0637000 (OsTGAP1)- identity=57.6; qcov=1.01; evalue=3.61e-27; confidence=medium |
| GO | GO:0006351 (DNA-templated transcription); GO:0043565 (sequence-specific DNA binding) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009823 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.60000 | XP_057793212.1 |
| 2 | Cytosol | 细胞质基质 | 0.60000 | XP_057793212.1 |
| 3 | Secreted | 分泌到胞外 | 0.20000 | XP_057793212.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793212.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793212.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:59889092 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B12,C27 |
Chr2:59889107 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B112,B5,C1 |
Chr2:59889182 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A10,B120 |
Chr2:59889221 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B18,B76,C23 |
Chr2:59889228 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C87 |
Chr2:59889230 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A25,B123,B62 |
Chr2:59889257 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A19,B17,B41 |
Chr2:59889259 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B101,B74,C11,C69 |
Chr2:59889268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B109,B54,C19,C39 |
Chr2:59889291 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B122,C50,C64,C66,C87 |
Chr2:59889292 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B84 |
Chr2:59889379 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B48 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。