当前解析结果
SmilChr02G003837| 统一新 Gene ID | SmilChr02G003837 |
|---|---|
| 名称 | SmilChr02G003837 |
| 描述 | uncharacterized SmilChr02G003837 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 60064419 - 60064913 / - |
| NCBI Gene ID | LOC131009824 |
|---|---|
| GeneID | 131009824 |
| locus_tag | - |
| NCBI Name | LOC131009824 |
| 原始查询 | SmilChr02G003837 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0205337; species=rice; confidence=low |
| 产物 | hit=Os06g0205337; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=27.2; qcov=1.05; evalue=5.51e-07; confidence=low |
| Rice | Os06g0205337- identity=31.1; qcov=0.982; evalue=8.11e-20; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009824 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793213.1 |
| 2 | Nucleus | 细胞核 | 0.60000 | XP_057793213.1 |
| 3 | Cytosol | 细胞质基质 | 0.20000 | XP_057793213.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793213.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793213.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:60064446 |
G |
GAA |
2bp_insertion | frameshift_variant | 30 | A2,A24,A7,A9,B108,B121,B122,B125,B18,B2,B21,B25,B37,B52,B66,B69,B7,B71,B82,B93,B98,B99,C18,C39,C62,C72,C80,D5,D7,D8 |
Chr2:60064494 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B44 |
Chr2:60064496 |
G |
A |
EMS_canonical_SNV | stop_gained | 39 | A14,A20,A3,A5,B103,B105,B123,B130,B134,B135,B136,B137,B138,B24,B25,B3,B34,B49,B53,B58,B65,B69,B71,B74,B79,B83,B97,C28,C30,C34,C43,C45,C57,C58,C59,C63,C7,C9,D6 |
Chr2:60064538 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr2:60064565 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | A7 |
Chr2:60064565 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr2:60064570 |
GAA |
G |
2bp_deletion | frameshift_variant | 5 | B122,B26,C49,C64,C66 |
Chr2:60064570 |
GAA |
G |
2bp_deletion | CDS_variant | 5 | B122,B26,C49,C64,C66 |
Chr2:60064654 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B91,C87,D2 |
Chr2:60064678 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B133,C25,C81 |
Chr2:60064719 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D7 |
Chr2:60064726 |
C |
T |
EMS_canonical_SNV | stop_gained | 118 | A1,A13,A18,A21,A24,A3,A4,A6,B10,B100,B102,B103,B105,B106,B107,B108,B109,B110,B111,B117,B119,B12,B120,B123,B127,B128,B13,B131,B133,B137,B14,B16,B19,B24,B26,B28,B29,B3,B30,B33,B42,B43,B47,B5,B50,B51,B59,B6,B60,B64,B66,B68,B72,B73,B74,B75,B76,B77,B78,B8,B80,B81,B84,B85,B86,B87,B91,B94,B95,B99,C10,C14,C15,C17,C21,C23,C24,C27,C28,C29,C3,C30,C32,C37,C38,C41,C44,C46,C47,C48,C49,C5,C50,C51,C52,C53,C54,C55,C6,C60,C61,C62,C65,C67,C68,C70,C71,C72,C73,C75,C79,C83,C87,D1,D10,D2,D5,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。