Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003838`

染色体: Chr02 坐标: 60067055-60068849 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003838`
名称	SmilChr02G003838
描述	cyclin-D3-1-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	60067055 - 60068849 / `-`

ID 对照

NCBI Gene ID	`LOC131010781`
GeneID	`131010781`
locus_tag	`-`
NCBI Name	`LOC131010781`
原始查询	`SmilChr02G003838`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	cyclin-D3-1-like
产物	cyclin-D3-1-like
Arabidopsis	`AT4G34160` (CYCD3;1) CYCLIN D3;1 [Source:NCBI gene (formerly Entrezgene);Acc:829564] identity=48.5; qcov=0.871; evalue=2.01e-81; confidence=high
Rice	`Os09g0466100` (CycD2) - identity=39.8; qcov=0.76; evalue=1.08e-44; confidence=medium
GO	GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition)
KEGG	smil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
Pfam	PF00134 (Cyclin_N); PF02984 (Cyclin_C)
InterPro	-
eggNOG	-
NR	GeneID:131010781

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794426.1`
2	Chromosome	染色体	0.00000	`XP_057794426.1`
3	Centromere	着丝粒	0.00000	`XP_057794426.1`
4	Chromatin	染色质	0.00000	`XP_057794426.1`
5	Telomere	端粒	0.00000	`XP_057794426.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:60067354`	`G`	`A`	EMS_canonical_SNV	stop_gained	36	A1,A10,A3,A4,B1,B109,B114,B12,B120,B123,B132,B3,B35,B4,B58,B59,B61,B63,B69,B76,B78,C11,C17,C30,C38,C41,C50,C61,C67,C69,C74,C77,C82,C85,C9,D5
`Chr2:60067358`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B129
`Chr2:60067361`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B125,B60,B92,C20
`Chr2:60067463`	`TGA`	`T`	2bp_deletion	frameshift_variant	198	A1,A10,A13,A16,A18,A19,A2,A20,A23,A25,A3,A4,A5,A6,A7,A8,A9,B1,B10,B100,B102,B103,B105,B107,B108,B109,B110,B112,B113,B114,B115,B118,B120,B122,B123,B124,B125,B127,B128,B129,B13,B130,B131,B132,B133,B134,B135,B136,B14,B140,B16,B18,B2,B20,B23,B24,B25,B27,B29,B3,B30,B31,B32,B34,B35,B36,B37,B38,B39,B4,B41,B44,B5,B50,B52,B53,B54,B56,B57,B58,B59,B6,B60,B61,B62,B63,B64,B66,B67,B68,B69,B7,B70,B71,B72,B74,B75,B76,B77,B78,B8,B81,B82,B83,B84,B85,B86,B87,B88,B9,B90,B91,B92,B93,B94,B96,B97,B98,B99,C1,C10,C11,C12,C13,C15,C16,C17,C18,C19,C2,C20,C21,C22,C24,C25,C26,C29,C30,C31,C32,C33,C35,C36,C37,C38,C4,C41,C42,C43,C44,C45,C46,C48,C49,C5,C50,C51,C52,C54,C55,C57,C58,C6,C60,C61,C62,C64,C66,C67,C68,C69,C70,C71,C72,C73,C75,C76,C77,C78,C79,C8,C80,C81,C82,C83,C85,C86,C9,D10,D11,D2,D3,D4,D5,D6,D7,D8,D9
`Chr2:60067475`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B18,C18,C39
`Chr2:60067502`	`TC`	`T`	1bp_deletion	frameshift_variant	6	B29,B56,B9,B99,C54,C86
`Chr2:60067569`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B30
`Chr2:60067577`	`C`	`CT`	1bp_insertion	frameshift_variant	4	A16,A25,B8,C78
`Chr2:60067577`	`C`	`CT`	1bp_insertion	CDS_variant	4	A16,A25,B8,C78
`Chr2:60067668`	`T`	`TA`	1bp_insertion	frameshift_variant	63	A1,A10,A3,A4,A9,B1,B102,B109,B110,B114,B12,B120,B122,B123,B124,B132,B137,B18,B19,B26,B3,B35,B44,B50,B52,B55,B58,B59,B6,B61,B63,B69,B74,B76,B78,B79,B81,B95,C11,C17,C19,C28,C30,C31,C36,C38,C41,C44,C45,C46,C50,C53,C57,C61,C62,C69,C74,C77,C78,C85,C9,D10,D5
`Chr2:60067726`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:60067740`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B112,B114

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794426.1

341 aa

170

341

Cyclin_N

Cyclin_C

PF00134 Cyclin_N 76-177 aa PF02984 Cyclin_C 179-275 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794426.1`	Pfam	`PF00134`	Cyclin_N	Domain	76	177	3.4e-24	85.7	Cyclin, N-terminal domain
`XP_057794426.1`	Pfam	`PF02984`	Cyclin_C	Domain	179	275	4.2e-16	59.7	Cyclin, C-terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938443.1
CCCCGCCCTCTCTCTCACACACATACACACGATCGCGCACGTTAAGCACGAAACAAGTTAAAAGCGCAGGTCTCACACTGAGCGCCAAAGCCCATAAAGCAAAACCTACCCATAAAAATCCAATCTTTAGCCGTTTCCTCTCCTCTCCACTTCCCCACTCTCACAGATGTCTCGCACCACTTCTCTCTCTCTCTCTCTCTTTCTCTCTCTACCTGCATCTTTATTTGACTAGAATGACTGCTCCCTTTCTTCCCAAACCA...

CDS

1 records

下载 CDS FASTA

LOC131010781
ATGGTTTCCCACACCCAAATCCTAGACGCTCTGTTTTGCGAGGAAGACCATTTCGACACCACAGAAGAAAACTATAATTTCCTACAACAAGAAGAAGAAGACAACAGCTGCTCTTCACACCAATATTCCTTAAACGCCCATTCTTTCCTCAATCTCTTCGAACAAGACGAGGAGCTCATATCGCTACTGTACAAAGAGCAGCGAAACGAACCGCACCGTGGCTGCTTTGAAGAGGATCTAAGGGAAGAAGTAGTTCAATG...

Protein

1 records

下载 Protein FASTA

XP_057794426.1
MVSHTQILDALFCEEDHFDTTEENYNFLQQEEEDNSCSSHQYSLNAHSFLNLFEQDEELISLLYKEQRNEPHRGCFEEDLREEVVQWMLRVIGYYSFSALTAVLAVTYLDRFLHRCDQPWMFQLAAVACLSLAAKVDETDVPLLLDFQVEEPMYVFEPKNIQKMEILILSSLEWKMNLITPFSFLDYIARRLSLNDHICGEFLTRCERLILSVITDSRFMAYLPSTMASAAMVHLITSIEPSIDLEHHDRLLGILGINKD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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