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中文 EN

Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003844

染色体: Chr02 坐标: 60179763-60183590 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003844
名称SmilChr02G003844
描述pentatricopeptide repeat-containing protein At5g16860-like
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向60179763 - 60183590 / -

ID 对照

NCBI Gene IDLOC131010788
GeneID131010788
locus_tag-
NCBI NameLOC131010788
原始查询SmilChr02G003844

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述pentatricopeptide repeat-containing protein At5g16860-like
产物pentatricopeptide repeat-containing protein At5g16860-like
ArabidopsisAT5G16860 (AT5G16860)
Tetratricopeptide repeat (TPR)-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:831549]
identity=59.9; qcov=0.938; evalue=0; confidence=high
RiceOs04g0218100
-
identity=55.5; qcov=0.951; evalue=0; confidence=high
GOGO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0008270 (zinc ion binding); GO:0009451 (RNA modification)
KEGG-
PfamPF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF14432 (DYW_deaminase); PF20430 (Eplus_motif); PF20431 (E_motif)
InterPro-
eggNOG-
NRGeneID:131010788

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Mitochondrion 线粒体 0.80000 XP_057794430.1
2 Chloroplast 叶绿体 0.40000 XP_057794430.1
3 Nucleus 细胞核 0.00000 XP_057794430.1
4 Chromosome 染色体 0.00000 XP_057794430.1
5 Centromere 着丝粒 0.00000 XP_057794430.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:60181156 G A EMS_canonical_SNV CDS_variant 1 B51
Chr2:60181760 G A EMS_canonical_SNV CDS_variant 4 B41,C49,C64,C66
Chr2:60181793 C T EMS_canonical_SNV CDS_variant 5 B91,C21,C87,D2,D7
Chr2:60181832 G A EMS_canonical_SNV CDS_variant 1 B44
Chr2:60182621 C T EMS_canonical_SNV CDS_variant 1 C57
Chr2:60182791 C T EMS_canonical_SNV CDS_variant 3 B55,C39,C8
Chr2:60182974 C T EMS_canonical_SNV CDS_variant 5 B26,B41,C49,C64,C66
Chr2:60183022 C T EMS_canonical_SNV CDS_variant 4 B98,C18,C39,C5
Chr2:60183094 C T EMS_canonical_SNV CDS_variant 2 B95,D3
Chr2:60183287 G A EMS_canonical_SNV CDS_variant 1 B118
Chr2:60183337 C T EMS_canonical_SNV CDS_variant 4 B129,B58,C77,C9
Chr2:60183398 G A EMS_canonical_SNV CDS_variant 2 C36,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794430.1
849 aa
N
1
424
849
PPR
PPR_3
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF01535 PPR 160-187 aa PF13812 PPR_3 178-216 aa PF01535 PPR 191-220 aa PF01535 PPR 267-293 aa PF13041 PPR_2 292-330 aa PF13812 PPR_3 293-339 aa PF01535 PPR 295-325 aa PF13812 PPR_3 316-374 aa PF13041 PPR_2 328-375 aa PF01535 PPR 330-359 aa PF13041 PPR_2 438-487 aa PF01535 PPR 440-470 aa PF01535 PPR 516-541 aa PF13041 PPR_2 541-589 aa PF01535 PPR 544-574 aa PF01535 PPR 579-606 aa PF01535 PPR 617-641 aa PF20431 E_motif 659-721 aa PF20430 Eplus_motif 726-751 aa PF14432 DYW_deaminase 757-849 aa
XP_057794431.1
849 aa
N
1
424
849
PPR
PPR_3
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF01535 PPR 160-187 aa PF13812 PPR_3 178-216 aa PF01535 PPR 191-220 aa PF01535 PPR 267-293 aa PF13041 PPR_2 292-330 aa PF13812 PPR_3 293-339 aa PF01535 PPR 295-325 aa PF13812 PPR_3 316-374 aa PF13041 PPR_2 328-375 aa PF01535 PPR 330-359 aa PF13041 PPR_2 438-487 aa PF01535 PPR 440-470 aa PF01535 PPR 516-541 aa PF13041 PPR_2 541-589 aa PF01535 PPR 544-574 aa PF01535 PPR 579-606 aa PF01535 PPR 617-641 aa PF20431 E_motif 659-721 aa PF20430 Eplus_motif 726-751 aa PF14432 DYW_deaminase 757-849 aa
XP_057794432.1
849 aa
N
1
424
849
PPR
PPR_3
PPR
PPR
PPR_2
PPR_3
PPR
PPR_3
PPR_2
PPR
PPR_2
PPR
PPR
PPR_2
PPR
PPR
PPR
E_motif
Eplus_motif
DYW_deaminase
C
PF01535 PPR 160-187 aa PF13812 PPR_3 178-216 aa PF01535 PPR 191-220 aa PF01535 PPR 267-293 aa PF13041 PPR_2 292-330 aa PF13812 PPR_3 293-339 aa PF01535 PPR 295-325 aa PF13812 PPR_3 316-374 aa PF13041 PPR_2 328-375 aa PF01535 PPR 330-359 aa PF13041 PPR_2 438-487 aa PF01535 PPR 440-470 aa PF01535 PPR 516-541 aa PF13041 PPR_2 541-589 aa PF01535 PPR 544-574 aa PF01535 PPR 579-606 aa PF01535 PPR 617-641 aa PF20431 E_motif 659-721 aa PF20430 Eplus_motif 726-751 aa PF14432 DYW_deaminase 757-849 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057794430.1 Pfam PF01535 PPR Repeat 160 187 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF13812 PPR_3 Repeat 178 216 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794430.1 Pfam PF01535 PPR Repeat 191 220 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF01535 PPR Repeat 267 293 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF13041 PPR_2 Repeat 292 330 4.8e-81 267.4 PPR repeat family
XP_057794430.1 Pfam PF13812 PPR_3 Repeat 293 339 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794430.1 Pfam PF01535 PPR Repeat 295 325 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF13812 PPR_3 Repeat 316 374 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794430.1 Pfam PF13041 PPR_2 Repeat 328 375 4.8e-81 267.4 PPR repeat family
XP_057794430.1 Pfam PF01535 PPR Repeat 330 359 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF13041 PPR_2 Repeat 438 487 4.8e-81 267.4 PPR repeat family
XP_057794430.1 Pfam PF01535 PPR Repeat 440 470 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF01535 PPR Repeat 516 541 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF13041 PPR_2 Repeat 541 589 4.8e-81 267.4 PPR repeat family
XP_057794430.1 Pfam PF01535 PPR Repeat 544 574 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF01535 PPR Repeat 579 606 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF01535 PPR Repeat 617 641 2.4e-79 256.9 PPR repeat
XP_057794430.1 Pfam PF20431 E_motif Repeat 659 721 6.5e-29 100.7 E motif
XP_057794430.1 Pfam PF20430 Eplus_motif Motif 726 751 1.9e-09 37.8 E+ motif
XP_057794430.1 Pfam PF14432 DYW_deaminase Domain 757 849 1.6e-46 156.8 DYW family of nucleic acid deaminases
XP_057794431.1 Pfam PF01535 PPR Repeat 160 187 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF13812 PPR_3 Repeat 178 216 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794431.1 Pfam PF01535 PPR Repeat 191 220 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF01535 PPR Repeat 267 293 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF13041 PPR_2 Repeat 292 330 4.8e-81 267.4 PPR repeat family
XP_057794431.1 Pfam PF13812 PPR_3 Repeat 293 339 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794431.1 Pfam PF01535 PPR Repeat 295 325 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF13812 PPR_3 Repeat 316 374 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794431.1 Pfam PF13041 PPR_2 Repeat 328 375 4.8e-81 267.4 PPR repeat family
XP_057794431.1 Pfam PF01535 PPR Repeat 330 359 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF13041 PPR_2 Repeat 438 487 4.8e-81 267.4 PPR repeat family
XP_057794431.1 Pfam PF01535 PPR Repeat 440 470 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF01535 PPR Repeat 516 541 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF13041 PPR_2 Repeat 541 589 4.8e-81 267.4 PPR repeat family
XP_057794431.1 Pfam PF01535 PPR Repeat 544 574 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF01535 PPR Repeat 579 606 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF01535 PPR Repeat 617 641 2.4e-79 256.9 PPR repeat
XP_057794431.1 Pfam PF20431 E_motif Repeat 659 721 6.5e-29 100.7 E motif
XP_057794431.1 Pfam PF20430 Eplus_motif Motif 726 751 1.9e-09 37.8 E+ motif
XP_057794431.1 Pfam PF14432 DYW_deaminase Domain 757 849 1.6e-46 156.8 DYW family of nucleic acid deaminases
XP_057794432.1 Pfam PF01535 PPR Repeat 160 187 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF13812 PPR_3 Repeat 178 216 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794432.1 Pfam PF01535 PPR Repeat 191 220 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF01535 PPR Repeat 267 293 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF13041 PPR_2 Repeat 292 330 4.8e-81 267.4 PPR repeat family
XP_057794432.1 Pfam PF13812 PPR_3 Repeat 293 339 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794432.1 Pfam PF01535 PPR Repeat 295 325 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF13812 PPR_3 Repeat 316 374 1.8e-29 102.3 Pentatricopeptide repeat domain
XP_057794432.1 Pfam PF13041 PPR_2 Repeat 328 375 4.8e-81 267.4 PPR repeat family
XP_057794432.1 Pfam PF01535 PPR Repeat 330 359 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF13041 PPR_2 Repeat 438 487 4.8e-81 267.4 PPR repeat family
XP_057794432.1 Pfam PF01535 PPR Repeat 440 470 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF01535 PPR Repeat 516 541 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF13041 PPR_2 Repeat 541 589 4.8e-81 267.4 PPR repeat family
XP_057794432.1 Pfam PF01535 PPR Repeat 544 574 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF01535 PPR Repeat 579 606 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF01535 PPR Repeat 617 641 2.4e-79 256.9 PPR repeat
XP_057794432.1 Pfam PF20431 E_motif Repeat 659 721 6.5e-29 100.7 E motif
XP_057794432.1 Pfam PF20430 Eplus_motif Motif 726 751 1.9e-09 37.8 E+ motif
XP_057794432.1 Pfam PF14432 DYW_deaminase Domain 757 849 1.6e-46 156.8 DYW family of nucleic acid deaminases

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA
XM_057938449.1
AATTTCAGTAACCAATGTGCCCACCCCCTTCCCACCGGGCGCCGCTATTTCTGTAGATGGAATGCTGTATTCTTCAACCTTCCCGCCAAACTGCAGCAACCGCGCCGCCGCTCTCCGACCACTGCTTCCCAAACTCGGCTTCTCTTCTACCACAGCTCATCACCGCGTCTCCTTATCCGAGGACGATCTCATCCAACCACACACCACAGCACCCTCCCCCTCTGCGCAGCAACTCCTCTCCGATTTCCTCTCCGATGGAA...
XM_057938448.1
AATTTCAGTAACCAATGTGCCCACCCCCTTCCCACCGGGCGCCGCTATTTCTGTAGATGGAATGCTGTATTCTTCAACCTTCCCGCCAAACTGCAGCAACCGCGCCGCCGCTCTCCGACCACTGCTTCCCAAACTCGGCTTCTCTTCTACCACAGCTCATCACCGCGTCTCCTTATCCGAGGACGATCTCATCCAACCACACACCACAGCACCCTCCCCCTCTGCGCAGCAACTCCTCTCCGATTTCCTCTCCGATGGAA...

CDS

3 records

下载 CDS FASTA
LOC131010788
ATGCTGTATTCTTCAACCTTCCCGCCAAACTGCAGCAACCGCGCCGCCGCTCTCCGACCACTGCTTCCCAAACTCGGCTTCTCTTCTACCACAGCTCATCACCGCGTCTCCTTATCCGAGGACGATCTCATCCAACCACACACCACAGCACCCTCCCCCTCTGCGCAGCAACTCCTCTCCGATTTCCTCTCCGATGGAAGGCACTCCGACGTGCTCTCCGTCCTCCGCCTCACTCCGCCCTCCCGCTACCTCGTCTTCTA...
LOC131010788
ATGCTGTATTCTTCAACCTTCCCGCCAAACTGCAGCAACCGCGCCGCCGCTCTCCGACCACTGCTTCCCAAACTCGGCTTCTCTTCTACCACAGCTCATCACCGCGTCTCCTTATCCGAGGACGATCTCATCCAACCACACACCACAGCACCCTCCCCCTCTGCGCAGCAACTCCTCTCCGATTTCCTCTCCGATGGAAGGCACTCCGACGTGCTCTCCGTCCTCCGCCTCACTCCGCCCTCCCGCTACCTCGTCTTCTA...

Protein

3 records

下载 Protein FASTA
XP_057794430.1
MLYSSTFPPNCSNRAAALRPLLPKLGFSSTTAHHRVSLSEDDLIQPHTTAPSPSAQQLLSDFLSDGRHSDVLSVLRLTPPSRYLVFYWNNLIKRSVSLRDNRNVLHLFDEMRRLQWMPDEHTYPYALKACGDLSSLAAGTSVHALALVSGFTNCNVFVDNATIAMYGRCGASDKARQLFDEMLERGIFDTVSWNSIISVYVQIGDSRKALRMFKKMVSRGDMLLRADAVSLVNILPACASLRLRRQGAEIHAYAVRRGLI...
XP_057794431.1
MLYSSTFPPNCSNRAAALRPLLPKLGFSSTTAHHRVSLSEDDLIQPHTTAPSPSAQQLLSDFLSDGRHSDVLSVLRLTPPSRYLVFYWNNLIKRSVSLRDNRNVLHLFDEMRRLQWMPDEHTYPYALKACGDLSSLAAGTSVHALALVSGFTNCNVFVDNATIAMYGRCGASDKARQLFDEMLERGIFDTVSWNSIISVYVQIGDSRKALRMFKKMVSRGDMLLRADAVSLVNILPACASLRLRRQGAEIHAYAVRRGLI...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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