当前解析结果
SmilChr02G003849| 统一新 Gene ID | SmilChr02G003849 |
|---|---|
| 名称 | SmilChr02G003849 |
| 描述 | low-temperature-induced cysteine proteinase-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 60233021 - 60235618 / - |
| NCBI Gene ID | LOC131010792 |
|---|---|
| GeneID | 131010792 |
| locus_tag | - |
| NCBI Name | LOC131010792 |
| 原始查询 | SmilChr02G003849 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | low-temperature-induced cysteine proteinase-like |
| 产物 | low-temperature-induced cysteine proteinase-like |
| Arabidopsis | AT1G47128 (RD21A)Granulin repeat cysteine protease family protein [Source:NCBI gene (formerly Entrezgene);Acc:841122] identity=63.8; qcov=0.931; evalue=0; confidence=high |
| Rice | Os04g0670200- identity=57; qcov=0.917; evalue=3.33e-178; confidence=high |
| GO | GO:0004197 (cysteine-type endopeptidase activity); GO:0005615 (GO:0005615); GO:0005764 (lysosome); GO:0051603 (GO:0051603) |
| KEGG | - |
| Pfam | PF00112 (Peptidase_C1); PF00396 (Granulin); PF08246 (Inhibitor_I29) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010792 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Vacuole | 液泡 | 1.00000 | XP_057794436.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794436.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794436.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794436.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794436.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:60233709 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C18 |
Chr2:60233730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr2:60233824 |
TCC |
T |
2bp_deletion | frameshift_variant | 1 | D3 |
Chr2:60233824 |
TCC |
T |
2bp_deletion | CDS_variant | 1 | D3 |
Chr2:60234295 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A1 |
Chr2:60234439 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C4,C44 |
Chr2:60235297 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A10,B46,C12 |
Chr2:60235319 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C36,C77 |
Chr2:60235364 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B11,B62,B86 |
Chr2:60235431 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C15 |
Chr2:60235499 |
CTG |
C |
2bp_deletion | frameshift_variant | 8 | B124,B132,B20,B27,B4,C25,C74,C85 |
Chr2:60235521 |
AC |
A |
1bp_deletion | frameshift_variant | 125 | A1,A11,A14,A16,A23,A6,A8,B1,B101,B104,B105,B106,B107,B109,B11,B110,B118,B119,B12,B120,B123,B125,B129,B133,B136,B137,B138,B14,B140,B15,B16,B17,B28,B29,B30,B31,B32,B33,B38,B40,B41,B45,B47,B48,B51,B54,B55,B57,B59,B6,B61,B62,B64,B66,B67,B69,B7,B70,B72,B76,B77,B79,B8,B80,B81,B82,B84,B86,B87,B88,B90,B92,B93,B95,B99,C10,C11,C15,C19,C2,C20,C21,C26,C30,C36,C37,C38,C39,C4,C40,C42,C43,C44,C45,C47,C49,C5,C50,C51,C52,C54,C55,C56,C58,C62,C65,C67,C7,C70,C71,C72,C73,C74,C75,C77,C79,C81,C82,C86,D1,D11,D3,D6,D8,D9 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794436.1PF08246
Inhibitor_I29 77-133 aa
PF00112
Peptidase_C1 164-379 aa
PF00396
Granulin 413-459 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794436.1 |
Pfam | PF08246 |
Inhibitor_I29 | Domain | 77 | 133 | 7.2e-19 | 68.6 | Cathepsin propeptide inhibitor domain (I29) |
XP_057794436.1 |
Pfam | PF00112 |
Peptidase_C1 | Domain | 164 | 379 | 1.6e-86 | 290.6 | Papain family cysteine protease |
XP_057794436.1 |
Pfam | PF00396 |
Granulin | Family | 413 | 459 | 9.8e-09 | 36.0 | Granulin |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。