当前解析结果
SmilChr02G003855| 统一新 Gene ID | SmilChr02G003855 |
|---|---|
| 名称 | SmilChr02G003855 |
| 描述 | kinesin-like protein KIN-4A |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 60305438 - 60314476 / - |
| NCBI Gene ID | LOC131010797 |
|---|---|
| GeneID | 131010797 |
| locus_tag | - |
| NCBI Name | LOC131010797 |
| 原始查询 | SmilChr02G003855 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | kinesin-like protein KIN-4A |
| 产物 | kinesin-like protein KIN-4A |
| Arabidopsis | AT5G47820 (FRA1)P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834833] identity=76.4; qcov=0.996; evalue=0; confidence=high |
| Rice | Os09g0114500 (BC12)kinesin-like protein KIN-4A [Source:NCBI gene (formerly Entrezgene);Acc:4346402] identity=73; qcov=0.995; evalue=0; confidence=high |
| GO | GO:0003777 (microtubule motor activity); GO:0005524 (ATP binding); GO:0007018 (microtubule-based movement); GO:0007052 (mitotic spindle organization); GO:0008017 (microtubule binding) |
| KEGG | - |
| Pfam | PF00225 (Kinesin); PF16796 (Microtub_bd); PF25764 (KIF21A_4th) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010797 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057794441.1 |
| 2 | Spindle | Spindle | 1.00000 | XP_057794441.1 |
| 3 | Spindle pole | Spindle pole | 0.80000 | XP_057794441.1 |
| 4 | Chromosome | 染色体 | 0.60000 | XP_057794441.1 |
| 5 | Midbody | Midbody | 0.60000 | XP_057794441.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:60306801 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B94 |
Chr2:60308929 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B129 |
Chr2:60309612 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:60309838 |
GT |
G |
1bp_deletion | frameshift_variant | 53 | A10,A15,A23,A25,A4,A5,A9,B100,B102,B108,B109,B11,B110,B114,B118,B12,B128,B129,B130,B131,B135,B3,B30,B31,B33,B35,B43,B53,B57,B62,B77,B8,B85,B87,B9,B99,C21,C23,C27,C30,C33,C43,C5,C55,C58,C72,C75,C78,C79,C81,D10,D11,D6 |
Chr2:60310183 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B101,B94 |
Chr2:60310195 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B111,B42,B43 |
Chr2:60310270 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B1 |
Chr2:60310941 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:60311447 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B6 |
Chr2:60311723 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C22 |
Chr2:60312667 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B125,B15,B76,B99,D9 |
Chr2:60312735 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794441.1PF00225
Kinesin 19-368 aa
PF16796
Microtub_bd 41-151 aa
PF25764
KIF21A_4th 476-656 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794441.1 |
Pfam | PF00225 |
Kinesin | Domain | 19 | 368 | 6.2e-104 | 348.2 | Kinesin motor domain |
XP_057794441.1 |
Pfam | PF16796 |
Microtub_bd | Domain | 41 | 151 | 7.4e-20 | 72.1 | Microtubule binding |
XP_057794441.1 |
Pfam | PF25764 |
KIF21A_4th | Domain | 476 | 656 | 3.3e-55 | 187.3 | KIF21A-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。