Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003859`

染色体: Chr02 坐标: 60390848-60394065 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003859`
名称	SmilChr02G003859
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	60390848 - 60394065 / `-`

ID 对照

NCBI Gene ID	`LOC131010801`
GeneID	`131010801`
locus_tag	`-`
NCBI Name	`LOC131010801`
原始查询	`SmilChr02G003859`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	zinc finger BED domain-containing protein RICESLEEPER 2-like
产物	zinc finger BED domain-containing protein RICESLEEPER 2-like
Arabidopsis	`AT3G42170` (DAYSLEEPER) BED zinc finger and hAT dimerization domain-containing protein DAYSLEEPER [Source:NCBI gene (formerly Entrezgene);Acc:3769417] identity=31.4; qcov=0.938; evalue=8.26e-46; confidence=low
Rice	`Os05g0583100` - identity=34.9; qcov=0.949; evalue=4.37e-57; confidence=low
GO	GO:0003677 (DNA binding); GO:0046983 (protein dimerization activity)
KEGG	-
Pfam	PF05699 (Dimer_Tnp_hAT); PF14372 (hAT-like_RNase-H); PF27039 (ZBED1_RNase-like_helical)
InterPro	-
eggNOG	-
NR	GeneID:131010801

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794445.1`
2	Cytoplasm	细胞质	0.20000	`XP_057794445.1`
3	Chromosome	染色体	0.00000	`XP_057794445.1`
4	Centromere	着丝粒	0.00000	`XP_057794445.1`
5	Chromatin	染色质	0.00000	`XP_057794445.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:60391366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:60391369`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:60391454`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D1
`Chr2:60391695`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C28,C44
`Chr2:60392308`	`C`	`T`	EMS_canonical_SNV	stop_gained	1	C10
`Chr2:60392308`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C10
`Chr2:60392334`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C10,C79
`Chr2:60392352`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,C10,C79
`Chr2:60392372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B94,C10,C79
`Chr2:60392374`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B94,C10,C79

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794445.1

359 aa

180

359

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27039 ZBED1_RNase-like_helical 2-69 aa PF14372 hAT-like_RNase-H 89-186 aa PF05699 Dimer_Tnp_hAT 248-331 aa

XP_057794446.1

353 aa

176

353

ZBED1_RNase-like_helical

hAT-like_RNase-H

Dimer_Tnp_hAT

PF27039 ZBED1_RNase-like_helical 2-69 aa PF14372 hAT-like_RNase-H 89-186 aa PF05699 Dimer_Tnp_hAT 248-331 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794445.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	2	69	2e-17	63.9	ZBED1 RNase-like helical domain
`XP_057794445.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	89	186	8.6e-21	74.7	hAT-like transposase, RNase-H fold
`XP_057794445.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	248	331	5.8e-29	100.4	hAT family C-terminal dimerisation region
`XP_057794446.1`	Pfam	`PF27039`	ZBED1_RNase-like_helical	Domain	2	69	1.9e-17	64.0	ZBED1 RNase-like helical domain
`XP_057794446.1`	Pfam	`PF14372`	hAT-like_RNase-H	Domain	89	186	8.2e-21	74.8	hAT-like transposase, RNase-H fold
`XP_057794446.1`	Pfam	`PF05699`	Dimer_Tnp_hAT	Domain	248	331	5.6e-29	100.5	hAT family C-terminal dimerisation region

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938463.1
TTTTTAAAAGCAGAACCCACCATCTCTCTCATTCTCACAATTAAAAACGCTGCTCAACTCTCTCTCTCAAAATCACGCTGCTCACATCTCTCTTTCTCTCGCTCGATTCCGGCGTCCTTCTTCCCGGCGAGTCATCGCTGGAAACCATCTCTCTTTCTCGCTCAATCCAGCCATCTCCTCCCTCGAACTTCCGCCGCCGCGGCTCTTCTCTTCAACGGCGAGGAGCGTCGCTTTCTGTTGCTCCGGCGACTCACAGCGAG...

XM_057938462.1
TTTTTAAAAGCAGAACCCACCATCTCTCTCATTCTCACAATTAAAAACGCTGCTCAACTCTCTCTCTCAAAATCACGCTGCTCACATCTCTCTTTCTCTCGCTCGATTCCGGCGTCCTTCTTCCCGGCGAGTCATCGCTGGAAACCATCTCTCTTTCTCGCTCAATCCAGCCATCTCCTCCCTCGAACTTCCGCCGCCGCGGCTCTTCTCTTCAACGGCGAGGAGCGTCGCTTTCTGTTGCTCCGGCGACTCACAGCGAG...

CDS

2 records

下载 CDS FASTA

LOC131010801
ATGTTCGGTGAAATTGCAAAGCAGTTGGAATTATCTTCGAAGAAGCTTGTCTTGGATTGTGTAACAAGATGGAATGCAACATATTTTATGTTGTCATGTGCTTTGGAGTTCAAAGCCGTTTTTCCAAGATATCAACAAAGGGATCCTTCATATACTACATTGCCGAGTGATGAGGAATGGGAGAAAGTGCGCATTGTTTGTTCTTTCCTTGAAGATTTTCATGAGATCACTGAACTCATCTCAGGTTCTGAGTACCCGAC...

Protein

2 records

下载 Protein FASTA

XP_057794445.1
MFGEIAKQLELSSKKLVLDCVTRWNATYFMLSCALEFKAVFPRYQQRDPSYTTLPSDEEWEKVRIVCSFLEDFHEITELISGSEYPTANLFLVKLVHIKSLLTYESLDKDSGTTATFMEKMLENMKLKFDKYWGSCNLLISIAAVLDPRNKMKYIEWCADNCYSGVEGIELKVTVFETLRNLYAEYVEAYRVSTSTTNIVRNASDAQTGSSSNVSGVSSVKSSTSRSQSKYESFRKTVTSVDQMKSDFDLYFEEAVEEWN...

XP_057794446.1
MFGEIAKQLELSSKKLVLDCVTRWNATYFMLSCALEFKAVFPRYQQRDPSYTTLPSDEEWEKVRIVCSFLEDFHEITELISGSEYPTANLFLVKLVHIKSLLTYESLDKDSGTTATFMEKMLENMKLKFDKYWGSCNLLISIAAVLDPRNKMKYIEWCADNCYSGVEGIELKVTVFETLRNLYAEYVEAYRVSTSTTNIVRNASDAQTGSSSNVSGVSSVKSSTSRSQSKYESFRKTVTSVDQMKSDFDLYFEEAVEEWN...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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