当前解析结果
SmilChr02G003863| 统一新 Gene ID | SmilChr02G003863 |
|---|---|
| 名称 | SmilChr02G003863 |
| 描述 | ethylene-responsive transcription factor ERF017-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 60574796 - 60575290 / - |
| NCBI Gene ID | LOC131009828 |
|---|---|
| GeneID | 131009828 |
| locus_tag | - |
| NCBI Name | LOC131009828 |
| 原始查询 | SmilChr02G003863 |
| 来源 | GFF basic annotation; NCBI GO GAF; Arabidopsis/Rice homolog |
|---|---|
| 描述 | ethylene-responsive transcription factor ERF017-like |
| 产物 | ethylene-responsive transcription factor ERF017-like |
| Arabidopsis | AT1G19210 (AT1G19210)Integrase-type DNA-binding superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838504] identity=50.9; qcov=0.72; evalue=9.7e-29; confidence=medium |
| Rice | Os02g0781300 (OsERF#011)- identity=46.6; qcov=0.628; evalue=2.49e-18; confidence=low |
| GO | GO:0003677 (DNA binding); GO:0003700 (DNA-binding transcription factor activity); GO:0006355 (regulation of DNA-templated transcription) |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009828 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793217.1 |
| 2 | Cytoplasm | 细胞质 | 0.20000 | XP_057793217.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793217.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793217.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793217.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:60574828 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr2:60574896 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B59 |
Chr2:60574898 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:60574907 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A11 |
Chr2:60574925 |
G |
GA |
1bp_insertion | frameshift_variant | 2 | B31,C81 |
Chr2:60574925 |
G |
GA |
1bp_insertion | CDS_variant | 2 | B31,C81 |
Chr2:60574960 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B13 |
Chr2:60574994 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B107,B140,B91,C87,D2 |
Chr2:60574995 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B56,C34,D9 |
Chr2:60575024 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B33 |
Chr2:60575044 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:60575055 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。