Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003868`

染色体: Chr02 坐标: 60691132-60696390 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003868`
名称	SmilChr02G003868
描述	probable E3 ubiquitin-protein ligase RHG1A
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	60691132 - 60696390 / `+`

ID 对照

NCBI Gene ID	`LOC131010810`
GeneID	`131010810`
locus_tag	`-`
NCBI Name	`LOC131010810`
原始查询	`SmilChr02G003868`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable E3 ubiquitin-protein ligase RHG1A
产物	probable E3 ubiquitin-protein ligase RHG1A
Arabidopsis	`AT5G42940` (AT5G42940) RING/U-box superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834306] identity=37.5; qcov=1.04; evalue=5.11e-104; confidence=medium
Rice	`Os04g0648800` (OsHIP1) - identity=33.1; qcov=1.02; evalue=3.83e-82; confidence=low
GO	GO:0061630 (ubiquitin protein ligase activity)
KEGG	-
Pfam	PF00097 (zf-C3HC4); PF12678 (zf-rbx1); PF13445 (zf-RING_UBOX); PF13639 (zf-RING_2); PF13923 (zf-C3HC4_2); PF17123 (zf-RING_11)
InterPro	-
eggNOG	-
NR	GeneID:131010810

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794455.1`
2	Nucleoplasm	核质	0.40000	`XP_057794455.1`
3	Nuclear body	核内小体	0.20000	`XP_057794456.1`
4	PML body	PML body	0.20000	`XP_057794456.1`
5	Cytoplasm	细胞质	0.20000	`XP_057794455.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:60692532`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B11,B58,C77,C9
`Chr2:60692675`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	A24,A7,B108,B2,D5
`Chr2:60692890`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A7
`Chr2:60692976`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A20,B91
`Chr2:60693071`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B131
`Chr2:60693151`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B13
`Chr2:60693241`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:60693253`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	C2,C32,C68,C8
`Chr2:60693502`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:60693505`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B4,C21
`Chr2:60693564`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B98,C36,C77,C82
`Chr2:60693566`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A21,A7,B18

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794455.1

728 aa

364

728

zf-rbx1

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 679-722 aa PF17123 zf-RING_11 681-708 aa PF13445 zf-RING_UBOX 681-719 aa PF00097 zf-C3HC4 681-721 aa PF13923 zf-C3HC4_2 681-721 aa PF13639 zf-RING_2 681-722 aa

XP_057794456.1

727 aa

364

727

zf-rbx1

zf-RING_11

zf-RING_UBOX

zf-C3HC4

zf-C3HC4_2

zf-RING_2

PF12678 zf-rbx1 678-721 aa PF17123 zf-RING_11 680-707 aa PF13445 zf-RING_UBOX 680-718 aa PF00097 zf-C3HC4 680-720 aa PF13923 zf-C3HC4_2 680-720 aa PF13639 zf-RING_2 680-721 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794455.1`	Pfam	`PF12678`	zf-rbx1	Domain	679	722	3.3e-08	34.3	RING-H2 zinc finger domain
`XP_057794455.1`	Pfam	`PF17123`	zf-RING_11	Domain	681	708	3.7e-07	30.4	RING-like zinc finger
`XP_057794455.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	681	719	1.4e-06	28.9	RING-type zinc-finger
`XP_057794455.1`	Pfam	`PF00097`	zf-C3HC4	Domain	681	721	3.9e-08	33.7	Zinc finger, C3HC4 type (RING finger)
`XP_057794455.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	681	721	1e-09	38.7	Zinc finger, C3HC4 type (RING finger)
`XP_057794455.1`	Pfam	`PF13639`	zf-RING_2	Domain	681	722	6.1e-13	49.5	Ring finger domain
`XP_057794456.1`	Pfam	`PF12678`	zf-rbx1	Domain	678	721	3.3e-08	34.3	RING-H2 zinc finger domain
`XP_057794456.1`	Pfam	`PF17123`	zf-RING_11	Domain	680	707	3.7e-07	30.4	RING-like zinc finger
`XP_057794456.1`	Pfam	`PF13445`	zf-RING_UBOX	Domain	680	718	1.4e-06	28.9	RING-type zinc-finger
`XP_057794456.1`	Pfam	`PF00097`	zf-C3HC4	Domain	680	720	3.9e-08	33.7	Zinc finger, C3HC4 type (RING finger)
`XP_057794456.1`	Pfam	`PF13923`	zf-C3HC4_2	Domain	680	720	1e-09	38.7	Zinc finger, C3HC4 type (RING finger)
`XP_057794456.1`	Pfam	`PF13639`	zf-RING_2	Domain	680	721	6.1e-13	49.5	Ring finger domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938473.1
TATTTTTCTTCCCTTTTTTTATGGAGCATTTCCTTATATTCCTTTTTCACCCAAAATTAAAAAAAAAAAGTTACTGTGGGGGAATGAAACAAAGTTACTGTGGGGGAATGAGGCTATTTGATTTGACTTTTTTGTAGGATGTGGTTGTGGGAATTGAATGAGATTTCTTAATTTTCATTTTTTGGTTTTGGTTGAAATTCCCTTTGTCTTTCTCATATATAGAGGAAGGAGAGAGAGAGGGGTATGAATGTGGCCTTATG...

XM_057938472.1
GAATTGAATGAGATTTCTTAATTTTCATTTTTTGGTTTTGGTTGAAATTCCCTTTGTCTTTCTCATATATAGAGGAAGGAGAGAGAGAGGGGTATGAATGTGGCCTTATGTTTATGCTAGTGTGAGGTGTTTTGAGTAAATTAAAGATTACTGTCCTCATTAATCACCCCACCCTTTCCCTTAATTTTTCATACCTCACCACCCACCAATTTCATTTCCATCATCTCTCTTTCTCTCACCCCATTTTGAAGACTCTGTTT...

CDS

2 records

下载 CDS FASTA

LOC131010810
ATGCAAGGGCCAAGTAGCTCTGTGAGTACTTTGCCTGAAAATATAAGTTTTGATCATGGCTCCGCGTCGGGTGATTCTACCATAGAGTCCCAAATGCCGTGGACTAGTATGCAGACCACCGTGCAAAACCGGCTACCAGATTACAGAATGTCGTCGTCTAGTGAGACCAATAATCAGTATTTGCAACATGTGAGGCGTGAGGGACCGAGTGTGGAGTGGAGTGTAGGCGAAACCAGTTCCAGTTCGTCGCAGCGCCTAGG...

Protein

2 records

下载 Protein FASTA

XP_057794455.1
MQGPSSSVSTLPENISFDHGSASGDSTIESQMPWTSMQTTVQNRLPDYRMSSSSETNNQYLQHVRREGPSVEWSVGETSSSSSQRLGDQNERKMEHTWTFGPRTNLALEERQYEQSDILSLDNIDVNSHGSQSAHGAFGLRTSSSNALPQDLNMISGFVDSEDDDCQVVERPSSYISIGPSNEQMQAPGTSSDSFSMPPGRGGYVMDEREDRPGCSMDGRRMSCKRKALEVHTGQSSGVGSSSCFQHDERSQWHTMPAAH...

XP_057794456.1
MQGPSSSVSTLPENISFDHGSASGDSTIESQMPWTSMQTTVQNRLPDYRMSSSSETNNQYLQHVRREGPSVEWSVGETSSSSSQRLGDQNERKMEHTWTFGPRTNLALEERQYEQSDILSLDNIDVNSHGSQSAHGAFGLRTSSSNALPQDLNMISGFVDSEDDDCQVVERPSSYISIGPSNEQMQAPGTSSDSFSMPPGRGGYVMDEREDRPGCSMDGRRMSCKRKALEVHTGQSSGVGSSSCFQHDERSQWHTMPAAH...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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