当前解析结果
SmilChr02G003881| 统一新 Gene ID | SmilChr02G003881 |
|---|---|
| 名称 | SmilChr02G003881 |
| 描述 | uncharacterized SmilChr02G003881 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 60874429 - 60878663 / - |
| NCBI Gene ID | LOC131010825 |
|---|---|
| GeneID | 131010825 |
| locus_tag | - |
| NCBI Name | LOC131010825 |
| 原始查询 | SmilChr02G003881 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841092]; symbol=AT1G45231; hit=AT1G45231; species=arabidopsis; confidence=medium |
| 产物 | S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841092]; symbol=AT1G45231; hit=AT1G45231; species=arabidopsis; confidence=medium |
| Arabidopsis | AT1G45231 (AT1G45231)S-adenosyl-L-methionine-dependent methyltransferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:841092] identity=52.9; qcov=0.586; evalue=1.07e-125; confidence=medium |
| Rice | Os03g0396900- identity=35.6; qcov=1.07; evalue=9.02e-115; confidence=medium |
| GO | GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0009452 (7-methylguanosine RNA capping); GO:0036261 (7-methylguanosine cap hypermethylation); GO:0071164 (RNA cap trimethylguanosine synthase activity) |
| KEGG | - |
| Pfam | PF00397 (WW); PF01170 (UPF0020); PF02475 (TRM5-TYW2_MTfase); PF09445 (Methyltransf_15); PF13649 (Methyltransf_25); PF13847 (Methyltransf_31) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010825 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794469.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057794469.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057794469.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057794469.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057794469.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:60875947 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B3,B97,C11,C69 |
Chr2:60876740 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C44,C47,C62,C70 |
Chr2:60876909 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B122,C64,C66 |
Chr2:60876975 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B57,B98,C82 |
Chr2:60876979 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:60877015 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B104,C29,C6 |
Chr2:60877072 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A21,B104,B84 |
Chr2:60877852 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | C44,C47,C62,C70 |
Chr2:60878334 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B98,C82 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794469.1PF00397
WW 296-323 aa
PF02475
TRM5-TYW2_MTfase 485-555 aa
PF09445
Methyltransf_15 485-639 aa
PF13649
Methyltransf_25 486-555 aa
PF13847
Methyltransf_31 486-555 aa
PF01170
UPF0020 496-559 aa
XP_057794470.1PF00397
WW 296-323 aa
PF02475
TRM5-TYW2_MTfase 482-552 aa
PF09445
Methyltransf_15 482-636 aa
PF13649
Methyltransf_25 483-552 aa
PF13847
Methyltransf_31 483-552 aa
PF01170
UPF0020 493-556 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794469.1 |
Pfam | PF00397 |
WW | Domain | 296 | 323 | 6.8e-07 | 29.9 | WW domain |
XP_057794469.1 |
Pfam | PF02475 |
TRM5-TYW2_MTfase | Domain | 485 | 555 | 1e-09 | 39.3 | TRM5/TYW2 methyltransferase domain |
XP_057794469.1 |
Pfam | PF09445 |
Methyltransf_15 | Family | 485 | 639 | 1.2e-41 | 142.7 | RNA cap guanine-N2 methyltransferase |
XP_057794469.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 486 | 555 | 4.6e-07 | 31.2 | Methyltransferase domain |
XP_057794469.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 486 | 555 | 1e-06 | 29.3 | Methyltransferase domain |
XP_057794469.1 |
Pfam | PF01170 |
UPF0020 | Domain | 496 | 559 | 9.2e-07 | 29.5 | RMKL-like, methyltransferase domain |
XP_057794470.1 |
Pfam | PF00397 |
WW | Domain | 296 | 323 | 6.8e-07 | 29.9 | WW domain |
XP_057794470.1 |
Pfam | PF02475 |
TRM5-TYW2_MTfase | Domain | 482 | 552 | 1e-09 | 39.3 | TRM5/TYW2 methyltransferase domain |
XP_057794470.1 |
Pfam | PF09445 |
Methyltransf_15 | Family | 482 | 636 | 1.2e-41 | 142.7 | RNA cap guanine-N2 methyltransferase |
XP_057794470.1 |
Pfam | PF13649 |
Methyltransf_25 | Domain | 483 | 552 | 4.6e-07 | 31.2 | Methyltransferase domain |
XP_057794470.1 |
Pfam | PF13847 |
Methyltransf_31 | Domain | 483 | 552 | 1e-06 | 29.3 | Methyltransferase domain |
XP_057794470.1 |
Pfam | PF01170 |
UPF0020 | Domain | 493 | 556 | 9.7e-07 | 29.4 | RMKL-like, methyltransferase domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。