Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003883

染色体: Chr02 坐标: 60886579-60891133 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003883
名称SmilChr02G003883
描述bZIP transcription factor 23
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向60886579 - 60891133 / -

ID 对照

NCBI Gene IDLOC131010826
GeneID131010826
locus_tag-
NCBI NameLOC131010826
原始查询SmilChr02G003883

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述bZIP transcription factor 23
产物bZIP transcription factor 23
ArabidopsisAT1G45249 (ABF2)
abscisic acid responsive elements-binding factor 2 [Source:NCBI gene (formerly Entrezgene);Acc:841095]
identity=50.4; qcov=1.01; evalue=3.87e-94; confidence=high
RiceOs02g0766700 (BZIP23)
-
identity=56; qcov=0.392; evalue=5.59e-41; confidence=low
GOGO:0003700 (DNA-binding transcription factor activity); GO:0005634 (nucleus); GO:0045893 (positive regulation of DNA-templated transcription)
KEGGsmil04075 (Plant hormone signal transduction - Salvia miltiorrhiza (redroot sage))
PfamPF00170 (bZIP_1); PF07716 (bZIP_2)
InterPro-
eggNOG-
NRGeneID:131010826

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057794471.1
2 Chromosome 染色体 0.00000 XP_057794471.1
3 Centromere 着丝粒 0.00000 XP_057794471.1
4 Chromatin 染色质 0.00000 XP_057794471.1
5 Telomere 端粒 0.00000 XP_057794471.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:60889341 C T EMS_canonical_SNV CDS_variant 1 C5
Chr2:60889396 C T EMS_canonical_SNV CDS_variant 1 B44
Chr2:60889764 C T EMS_canonical_SNV CDS_variant 4 C44,C47,C62,C70
Chr2:60889938 G A EMS_canonical_SNV CDS_variant 2 B131,D11

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057794471.1
462 aa
N
1
231
462
bZIP_2
bZIP_1
C
PF07716 bZIP_2 383-430 aa PF00170 bZIP_1 384-436 aa
XP_057794472.1
462 aa
N
1
231
462
bZIP_2
bZIP_1
C
PF07716 bZIP_2 383-430 aa PF00170 bZIP_1 384-436 aa
XP_057794473.1
462 aa
N
1
231
462
bZIP_2
bZIP_1
C
PF07716 bZIP_2 383-430 aa PF00170 bZIP_1 384-436 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057794471.1 Pfam PF07716 bZIP_2 Coiled-coil 383 430 1.8e-09 38.2 Basic region leucine zipper
XP_057794471.1 Pfam PF00170 bZIP_1 Coiled-coil 384 436 4.8e-13 49.7 bZIP transcription factor
XP_057794472.1 Pfam PF07716 bZIP_2 Coiled-coil 383 430 1.8e-09 38.2 Basic region leucine zipper
XP_057794472.1 Pfam PF00170 bZIP_1 Coiled-coil 384 436 4.8e-13 49.7 bZIP transcription factor
XP_057794473.1 Pfam PF07716 bZIP_2 Coiled-coil 383 430 1.8e-09 38.2 Basic region leucine zipper
XP_057794473.1 Pfam PF00170 bZIP_1 Coiled-coil 384 436 4.8e-13 49.7 bZIP transcription factor

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA
XR_009096672.1
TTCGCTATATTTATGTCTTTTTTTGGGCAAGAAAACTTTTGTGTTTGCGTTTGTTATTTTTTTCTCGGCTTGTCCCGTTCCTCACTCGACATCAGTTATCTGTTAACTGGGACTGCTTTGTTCAGTTTCTATTTTGGGTCAATCTCGTAGAGATTTGCGGTGAATTTGTAGAAGGAGTGAAGGATATAGAAAGGTGTGATCCGCTGTTGTTTTGATTTTGGGGTTTACTCTGTGGATTGATAGAATAAAGGGTTATTTGT...
XR_009096671.1
TTCGCTATATTTATGTCTTTTTTTGGGCAAGAAAACTTTTGTGTTTGCGTTTGTTATTTTTTTCTCGGCTTGTCCCGTTCCTCACTCGACATCAGTTATCTGTTAACTGGGACTGCTTTGTTCAGTTTCTATTTTGGGTCAATCTCGTAGAGATTTGCGGTGAATTTGTAGAAGGAGTGAAGGATATAGAAAGGTGTGATCCGCTGTTGTTTTGATTTTGGGGTTTACTCTGTGGATTGATAGAATAAAGGGTTATTTGT...

CDS

4 records

下载 CDS FASTA
LOC131010826
ATGGGGAGTAATTTAAATTTCAAGAATTTTGGGAACGAGCCAACGGCCGGAGGTGGTGGGAGGCCGCCGAATAATAGCCCCTTGACACGGCAGTCCTCTGTCTATTCTCTTACTTTTGATGAGTTCCAGAATACAATTGGGGGAAGTGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTTTTGAAGAGTATATGGAGTGCAGAGGACAATCAGAACTTCGCCCCCGCCAGCGGTGGTGGTGGTGGCGGCGGCGGCGG...
LOC131010826
ATGGGGAGTAATTTAAATTTCAAGAATTTTGGGAACGAGCCAACGGCCGGAGGTGGTGGGAGGCCGCCGAATAATAGCCCCTTGACACGGCAGTCCTCTGTCTATTCTCTTACTTTTGATGAGTTCCAGAATACAATTGGGGGAAGTGGGAAGGATTTTGGGTCAATGAACATGGATGAGCTTTTGAAGAGTATATGGAGTGCAGAGGACAATCAGAACTTCGCCCCCGCCAGCGGTGGTGGTGGTGGCGGCGGCGGCGG...

Protein

4 records

下载 Protein FASTA
XP_057794471.1
MGSNLNFKNFGNEPTAGGGGRPPNNSPLTRQSSVYSLTFDEFQNTIGGSGKDFGSMNMDELLKSIWSAEDNQNFAPASGGGGGGGGGGIGGGSGGQEGGGLQRQGSLILPRTLSQKTVDEVWRDMSKEAVAAKDGAVSVASFGMPQRQQTLGEITLEEFLVRAGVVREEAQLAAAANNAGIFGDLWHPVNSSSGLGFGYQQQHQQQQQQQQASRNLGLIGAGVTETSNQMAAQSAANLPLNVNGVRSAPQQMENHQLQQQ...
XP_057794472.1
MGSNLNFKNFGNEPTAGGGGRPPNNSPLTRQSSVYSLTFDEFQNTIGGSGKDFGSMNMDELLKSIWSAEDNQNFAPASGGGGGGGGGGIGGGSGGQEGGGLQRQGSLILPRTLSQKTVDEVWRDMSKEAVAAKDGAVSVASFGMPQRQQTLGEITLEEFLVRAGVVREEAQLAAAANNAGIFGDLWHPVNSSSGLGFGYQQQHQQQQQQQQASRNLGLIGAGVTETSNQMAAQSAANLPLNVNGVRSAPQQMENHQLQQQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器