Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003889`

染色体: Chr02 坐标: 60985113-60991057 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003889`
名称	SmilChr02G003889
描述	uncharacterized SmilChr02G003889
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	60985113 - 60991057 / `+`

ID 对照

NCBI Gene ID	`LOC131010832`
GeneID	`131010832`
locus_tag	`-`
NCBI Name	`LOC131010832`
原始查询	`SmilChr02G003889`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830849]; symbol=AT5G09890; hit=AT5G09890; species=arabidopsis; confidence=high
产物	Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830849]; symbol=AT5G09890; hit=AT5G09890; species=arabidopsis; confidence=high
Arabidopsis	`AT5G09890` (AT5G09890) Protein kinase family protein [Source:NCBI gene (formerly Entrezgene);Acc:830849] identity=77.2; qcov=0.952; evalue=0; confidence=high
Rice	`Os05g0511400` - identity=64.2; qcov=0.884; evalue=0; confidence=high
GO	GO:0004674 (protein serine/threonine kinase activity); GO:0005524 (ATP binding); GO:0018105 (peptidyl-serine phosphorylation); GO:0035556 (intracellular signal transduction)
KEGG	-
Pfam	PF00069 (Pkinase); PF00433 (Pkinase_C); PF03109 (ABC1); PF07714 (PK_Tyr_Ser-Thr)
InterPro	-
eggNOG	-
NR	GeneID:131010832

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794480.1`
2	Cytoplasm	细胞质	1.00000	`XP_057794480.1`
3	Cytosol	细胞质基质	1.00000	`XP_057794480.1`
4	Nucleoplasm	核质	0.40000	`XP_057794480.1`
5	Chromosome	染色体	0.00000	`XP_057794480.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:60985617`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B100,B101
`Chr2:60988949`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B1,B3,B97,C11,C69

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794480.1

524 aa

262

524

Pkinase

PK_Tyr_Ser-Thr

ABC1

Pkinase_C

PF00069 Pkinase 109-411 aa PF07714 PK_Tyr_Ser-Thr 112-260 aa PF03109 ABC1 183-259 aa PF00433 Pkinase_C 430-474 aa

XP_057794481.1

524 aa

262

524

Pkinase

PK_Tyr_Ser-Thr

ABC1

Pkinase_C

PF00069 Pkinase 109-411 aa PF07714 PK_Tyr_Ser-Thr 112-260 aa PF03109 ABC1 183-259 aa PF00433 Pkinase_C 430-474 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794480.1`	Pfam	`PF00069`	Pkinase	Domain	109	411	3.1e-67	227.4	Protein kinase domain
`XP_057794480.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	112	260	8.6e-28	98.1	Protein tyrosine and serine/threonine kinase
`XP_057794480.1`	Pfam	`PF03109`	ABC1	Domain	183	259	1.7e-07	31.4	ABC1 atypical kinase-like domain
`XP_057794480.1`	Pfam	`PF00433`	Pkinase_C	Family	430	474	1.3e-08	36.2	Protein kinase C terminal domain
`XP_057794481.1`	Pfam	`PF00069`	Pkinase	Domain	109	411	3.1e-67	227.4	Protein kinase domain
`XP_057794481.1`	Pfam	`PF07714`	PK_Tyr_Ser-Thr	Domain	112	260	8.6e-28	98.1	Protein tyrosine and serine/threonine kinase
`XP_057794481.1`	Pfam	`PF03109`	ABC1	Domain	183	259	1.7e-07	31.4	ABC1 atypical kinase-like domain
`XP_057794481.1`	Pfam	`PF00433`	Pkinase_C	Family	430	474	1.3e-08	36.2	Protein kinase C terminal domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938498.1
AATTCCTTCTTCCCCTCGAAAATTCACGTTGCCCCATTTCCAATCCATCTAAAATCATGGAATCCAATCTAATATTCAAGTATTAGATTAACTTAAATCCCAACAAATTACAGCTAATCATCTGCTTGCACACAGCCTGCCACTCCAAAATCCCATAAAAACACACACTCACACGCACACCCCACCACCAATTTTTTTAAGCATCTTTGATTGATCGATTCCACATCGAAACTCCCAACAAGAAAAAAAAAAAAAGAGTT...

XM_057938497.1
ATTCCTTCTTCCCCTCGAAAATTCACGTTGCCCCATTTCCAATCCATCTAAAATCATGGAATCCAATCTAATATTCAAGTATTAGATTAACTTAAATCCCAACAAATTACAGCTAATCATCTGCTTGCACACAGCCTGCCACTCCAAAATCCCATAAAAACACACACTCACACGCACACCCCACCACCAATTTTTTTAAGCATCTTTGATTGATCGATTCCACATCGAAACTCCCAACAAGAAAAAAAAAAAAAGAGTTG...

CDS

2 records

下载 CDS FASTA

LOC131010832
ATGGAGGGCGGCGGCGGTGAAGGGAGAATGGAGAGCCCGCAGATGAAGCTGCAGGCTCATCGGGCCTTCAGCTTGGAGCCCGATGAGGCGGTGTCATCGCCAGTGACGCGGCAGAAGGCGGCCGCTGCGAAGCAGTTCATCGAGAACCACTACAAGAATTACCTGCAGGGGTTGCAAGATCGCATGGAGAGGAGGAGGACGTTGCAGCGGAGGGCGCAGGAGGCACAGGTGTCGAGCGAGGAGGAGGAGATGATGTTGAG...

Protein

2 records

下载 Protein FASTA

XP_057794480.1
MEGGGGEGRMESPQMKLQAHRAFSLEPDEAVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRMERRRTLQRRAQEAQVSSEEEEMMLRNLEKRETEYMRLQRHKVGIDDFEQLTIIGKGAFGEVRLCRAKGTGEIYAMKKLKKSDMLSRGQVEHVRSERNLMVEVDSRCIVKLFYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYMAESILAISSIHQHGYVHRDIKPDNLILDKNGHLKLSDFGLCKTLEKY...

XP_057794481.1
MEGGGGEGRMESPQMKLQAHRAFSLEPDEAVSSPVTRQKAAAAKQFIENHYKNYLQGLQDRMERRRTLQRRAQEAQVSSEEEEMMLRNLEKRETEYMRLQRHKVGIDDFEQLTIIGKGAFGEVRLCRAKGTGEIYAMKKLKKSDMLSRGQVEHVRSERNLMVEVDSRCIVKLFYSFQDSDFLYLIMEYLPGGDIMTLLMREDILSEDVARFYMAESILAISSIHQHGYVHRDIKPDNLILDKNGHLKLSDFGLCKTLEKY...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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