Gene Card

Search by standard ID, NCBI Gene ID, GeneID, locus tag, transcript ID, protein ID, or a manually reviewed literature gene name. The page resolves the query to a Red Sage gene and integrates coordinates, sequences, annotations, subcellular localization, EMS variants, and downloads.

Resolved gene

`SmilChr02G003899`

Chromosome: Chr02 Coordinates: 61076966-61079679 Strand: + Biotype: lncRNA

Basic Information

Standard Gene ID	`SmilChr02G003899`
Name	SmilChr02G003899
Description	uncharacterized SmilChr02G003899
Chromosome / SeqID	Chr02 / NC_080388.1
Coordinates and Strand	61076966 - 61079679 / `+`

ID Mapping

NCBI Gene ID	`LOC131010842`
GeneID	`131010842`
locus_tag	`-`
NCBI Name	`LOC131010842`
Original query	`SmilChr02G003899`

Open ID mapping

Functional Annotation

Source	GFF basic annotation
Description	uncharacterized SmilChr02G003899
Product	uncharacterized SmilChr02G003899
Arabidopsis	`-` -
Rice	`-` -
GO	-
KEGG	-
Pfam	-
InterPro	-
eggNOG	-
NR	GeneID:131010842

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Subcellular Localization Top 5

Subcellular localization is still building, or no prediction is available for this gene yet.

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EMS Mutant Variants

No curated EMS CDS / LoF variants are available for this gene yet, or the EMS database is still building.

Open EMS variants

Predicted Protein Domains

This gene has no available Pfam domain hit in the current release.

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cDNA / CDS / Protein Sequences

Download genomic DNA (gene region only)

Every public gene has transcript sequence from the reference annotation. Protein-coding genes also have CDS and protein sequences. CDS and protein downloads do not apply to noncoding RNA. Version suffixes of original accessions are retained.

cDNA

1 records

Download cDNA FASTA

XR_009096676.1
ACCAGATTTGAGAGAGAGTAAGATGATTTCTGCTGCCAAACCTTGAGAGGTAAGTCTTGATTCGAATTTCCTCCATTCCTCTTTAGTACCTCCTGAAATTGTCAAGAAACAATATTTGCTGTTTCAGCTTTCATCTCATTGAATCCAATCAACAACATCAGCTACCAACACAAAACAATTGCAAGGTTAAGCGCAAGAGTAAGAACTAGTCAAGGGGTTACTGAACTGTAGCAAAGCTTTGCTATCAGGTTGAGCAATGG...

CDS

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Protein

0 records

CDS or protein sequence does not apply to this noncoding RNA.

Flanking Sequence Downloads

Upstream/downstream length is capped at 10000 bp. Negative-strand genes are reverse-complemented so the exported FASTA follows transcriptional 5′ to 3′ orientation.

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JBrowse

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