当前解析结果
SmilChr02G003904| 统一新 Gene ID | SmilChr02G003904 |
|---|---|
| 名称 | SmilChr02G003904 |
| 描述 | protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61115982 - 61120539 / - |
| NCBI Gene ID | LOC131010845 |
|---|---|
| GeneID | 131010845 |
| locus_tag | - |
| NCBI Name | LOC131010845 |
| 原始查询 | SmilChr02G003904 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like |
| 产物 | protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like |
| Arabidopsis | AT2G26570 (WEB1)WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT-like protein (DUF827) [Source:NCBI gene (formerly Entrezgene);Acc:817198] identity=63.3; qcov=0.774; evalue=0; confidence=high |
| Rice | Os03g0395300- identity=51.3; qcov=0.767; evalue=0; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF05701 (WEMBL) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010845 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057794503.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057794503.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057794503.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057794503.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057794503.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61116273 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | A7,B22 |
Chr2:61116428 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:61116452 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | A2,B108,B50,B94,C23 |
Chr2:61116537 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B10,B122,B32 |
Chr2:61116755 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C79 |
Chr2:61116948 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B107,B140,B32,C83 |
Chr2:61116965 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B104 |
Chr2:61116998 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B51 |
Chr2:61117267 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C61 |
Chr2:61117572 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B122,B32 |
Chr2:61117632 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B10,B122,B32 |
Chr2:61117677 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794503.1PF05701
WEMBL 226-790 aa
XP_057794504.1PF05701
WEMBL 226-790 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794503.1 |
Pfam | PF05701 |
WEMBL | Coiled-coil | 226 | 790 | 2.1e-239 | 796.7 | Weak chloroplast movement under blue light |
XP_057794504.1 |
Pfam | PF05701 |
WEMBL | Coiled-coil | 226 | 790 | 2.1e-239 | 796.7 | Weak chloroplast movement under blue light |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。