Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003911`

染色体: Chr02 坐标: 61195543-61200080 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003911`
名称	SmilChr02G003911
描述	protein FAR1-RELATED SEQUENCE 5-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61195543 - 61200080 / `-`

ID 对照

NCBI Gene ID	`LOC131009835`
GeneID	`131009835`
locus_tag	`-`
NCBI Name	`LOC131009835`
原始查询	`SmilChr02G003911`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein FAR1-RELATED SEQUENCE 5-like
产物	protein FAR1-RELATED SEQUENCE 5-like
Arabidopsis	`AT4G38180` (FRS5) FAR1-related sequence 5 [Source:NCBI gene (formerly Entrezgene);Acc:829974] identity=35.9; qcov=1.03; evalue=2.13e-77; confidence=medium
Rice	`Os03g0164400` - identity=35.4; qcov=0.955; evalue=7.37e-80; confidence=medium
GO	-
KEGG	-
Pfam	PF03101 (FAR1); PF10551 (MULE); PF21056 (ZSWIM1-3_RNaseH-like)
InterPro	-
eggNOG	-
NR	GeneID:131009835

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057793224.1`
2	Cytoplasm	细胞质	0.20000	`XP_057793224.1`
3	Chromosome	染色体	0.00000	`XP_057793224.1`
4	Centromere	着丝粒	0.00000	`XP_057793224.1`
5	Chromatin	染色质	0.00000	`XP_057793224.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61195546`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C86,D2
`Chr2:61195565`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C86
`Chr2:61195569`	`CG`	`C`	1bp_deletion	frameshift_variant	1	C80
`Chr2:61195569`	`CG`	`C`	1bp_deletion	CDS_variant	1	C80
`Chr2:61195570`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A18,B108,B99,C87
`Chr2:61195583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35
`Chr2:61198880`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A8
`Chr2:61198952`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B134,D7
`Chr2:61198963`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C28
`Chr2:61198977`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	A23,C11
`Chr2:61199034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B112,B47,C16,C51
`Chr2:61199036`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B14,B17,B59,B66

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057793224.1

397 aa

198

397

FAR1

ZSWIM1-3_RNaseH-like

MULE

PF03101 FAR1 55-99 aa PF21056 ZSWIM1-3_RNaseH-like 193-301 aa PF10551 MULE 221-314 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057793224.1`	Pfam	`PF03101`	FAR1	Domain	55	99	4.8e-11	43.9	FAR1 DNA-binding domain
`XP_057793224.1`	Pfam	`PF21056`	ZSWIM1-3_RNaseH-like	Domain	193	301	2.7e-08	34.5	Zinc finger SWIM domain-containing protein 1/3, RNaseH-like domain
`XP_057793224.1`	Pfam	`PF10551`	MULE	Domain	221	314	1.1e-30	106.6	MULE transposase domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057937241.1
ATGGAAGAAAATGTCAATAACGATGAGTTTTATATTCCTCAAGTTACAGAAGAGAGAATACCAAAAGCGGGAATGAAATTTTTATCAGTAGAGGCGGCATTTTCATTCTACAACCAATATGCACGAGAAGCGGGCTTTAGTGCTAGAATCAGCAATATCAAGAAGAATAAGCCAAAAACAGTAAGAGCTCGTGGAGAAGTTAGAACTAATTGCAAGGCAAAGATTTCTCTTCTCAAACAACAAACTGGATCCGATTGGAT...

CDS

1 records

下载 CDS FASTA

LOC131009835
ATGGAAGAAAATGTCAATAACGATGAGTTTTATATTCCTCAAGTTACAGAAGAGAGAATACCAAAAGCGGGAATGAAATTTTTATCAGTAGAGGCGGCATTTTCATTCTACAACCAATATGCACGAGAAGCGGGCTTTAGTGCTAGAATCAGCAATATCAAGAAGAATAAGCCAAAAACAGTAAGAGCTCGTGGAGAAGTTAGAACTAATTGCAAGGCAAAGATTTCTCTTCTCAAACAACAAACTGGATCCGATTGGAT...

Protein

1 records

下载 Protein FASTA

XP_057793224.1
MEENVNNDEFYIPQVTEERIPKAGMKFLSVEAAFSFYNQYAREAGFSARISNIKKNKPKTVRARGEVRTNCKAKISLLKQQTGSDWIINNFVEAHNHALCSPSKVHLLRSHRSVSIAKRALTQQFSEANVPTCQQMRLLEIEYGGPEHVGCTERDIRNIEQELRDEQKGVDAETLIEFFASEKDKNPTFFFDYETDSNKMFKRCFWADPKSRRQYSVFGDVVVFDSTYNTNKYGMIFAPFAGVNHHHQTIVFGCGFLSDE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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