Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003920

染色体: Chr02 坐标: 61280639-61283858 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003920
名称SmilChr02G003920
描述uncharacterized SmilChr02G003920
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向61280639 - 61283858 / +

ID 对照

NCBI Gene IDLOC131010861
GeneID131010861
locus_tag-
NCBI NameLOC131010861
原始查询SmilChr02G003920

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:829475]; symbol=AT4G33380; hit=AT4G33380; species=arabidopsis; confidence=high
产物dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:829475]; symbol=AT4G33380; hit=AT4G33380; species=arabidopsis; confidence=high
ArabidopsisAT4G33380 (AT4G33380)
dimethylallyl, adenosine tRNA methylthiotransferase [Source:NCBI gene (formerly Entrezgene);Acc:829475]
identity=57.4; qcov=1.04; evalue=2.18e-128; confidence=high
RiceOs06g0214100
-
identity=53; qcov=0.981; evalue=2.15e-111; confidence=high
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131010861

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Golgi apparatus 高尔基体 1.00000 XP_057794525.1
2 Golgi stack 高尔基堆 0.60000 XP_057794527.1
3 Nucleus 细胞核 0.00000 XP_057794525.1
4 Chromosome 染色体 0.00000 XP_057794525.1
5 Centromere 着丝粒 0.00000 XP_057794525.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:61280955 C T EMS_canonical_SNV CDS_variant 1 B10
Chr2:61281358 C T EMS_canonical_SNV CDS_variant 1 B10
Chr2:61281394 G A EMS_canonical_SNV CDS_variant 2 B139,D6
Chr2:61281583 C T EMS_canonical_SNV CDS_variant 1 D10
Chr2:61281607 G A EMS_canonical_SNV CDS_variant 1 B7
Chr2:61281627 C T EMS_canonical_SNV CDS_variant 3 B40,C53,C78
Chr2:61282592 G A EMS_canonical_SNV CDS_variant 4 B139,C5,D6,D9
Chr2:61282787 G A EMS_canonical_SNV CDS_variant 3 C2,C32,C68
Chr2:61282802 G A EMS_canonical_SNV CDS_variant 2 B107,B140
Chr2:61282840 G A EMS_canonical_SNV CDS_variant 2 B22,B78
Chr2:61283257 G A EMS_canonical_SNV CDS_variant 1 B94
Chr2:61283259 G A EMS_canonical_SNV CDS_variant 3 B132,B94,C47

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA
XM_057938545.1
AATGAAAAAAAAAAAAAAGAAGGAAAAAGAAATTGGCTCAAACATAGTTCTCAGACTAATGTACGCTCTATGCAGAGGAAAAAGGGTCAATCATTTCTTTGATACGCATACCATAAGGTATAGAAAAACATCCAGAAAACATTCCCTTAAACTCTCACTTCCTCCAAGAAATCTGTTGAATACCATACCATGTATTGTATATACGGAGAGAGATGAAGTAGCACAAGGTGAGTGAGTGGTGTCAGATGGCGAGAGGAGAG...
XM_057938543.1
AAAAGAAATTGGCTCAAACATAGTTCTCAGACTAATGTACGCTCTATGCAGAGGAAAAAGGGTCAATCATTTCTTTGATACGCATACCATAAGGTATAGAAAAACATCCAGAAAACATTCCCTTAAACTCTCACTTCCTCCAAGAAATCTGTTGAATACCATACCATGTATTGTATATACGGAGAGAGATGAAGTAGCACAAGGTGAGTGAGTGGTGTCAGATGGCGAGAGGAGAGTGGGGGATGAGTGGGAGGTGTTCT...

CDS

4 records

下载 CDS FASTA
LOC131010861
ATGGCGAGAGGAGAGTGGGGGATGAGTGGGAGGTGTTCTTACAAGAAGGCGACTCTCATCGTCTGTTGCATCAACCTTCTACTTGCTTTCTATGTGCTTCGCTCTCTTTATGCCTCTCTCTACATTTACCCTCTCGGCGACGCTCACACCACATTTAAGTACACCTCAGATCAGATTAGGAAAATGGAAGAGTCGGGTCGAATACGAAAAGCAGCAGAACCTACTGAGCTTATTGAGCTGGTGATGCAACTCAAAGCCAG...
LOC131010861
ATGGCGAGAGGAGAGTGGGGGATGAGTGGGAGGTGTTCTTACAAGAAGGCGACTCTCATCGTCTGTTGCATCAACCTTCTACTTGCTTTCTATGTGCTTCGCTCTCTTTATGCCTCTCTCTACATTTACCCTCTCGGCGACGCTCACACCACATTTAAGTACACCTCAGATCAGATTAGGAAAATGGAAGAGTCGGGTCGAATACGAAAAGCAGCAGAACCTACTGAGCTTATTGAGCTGGTGATGCAACTCAAAGCCAG...

Protein

4 records

下载 Protein FASTA
XP_057794525.1
MARGEWGMSGRCSYKKATLIVCCINLLLAFYVLRSLYASLYIYPLGDAHTTFKYTSDQIRKMEESGRIRKAAEPTELIELVMQLKAREERVELPKHLRQRLIDEIRSRLRSSDAAANATDQNEAVVAWHREKLEEARRIERGETLSSTILPEEAAGILVRALSSGWVEFVEEIDLWIPFSVTNREHDDKPDGEDEFDKEMLPGRQLPPECHGELHTDYGGAAVRWGLTHHKESAYECCMACLDQAKRAKPGQKKCNIWVY...
XP_057794526.1
MARGEWGMSGRCSYKKATLIVCCINLLLAFYVLRSLYASLYIYPLGDAHTTFKYTSDQIRKMEESGRIRKAAEPTELIELVMQLKAREERVELPKHLRQRLIDEIRSRLRSSDAAANATDQNEAVVAWHREKLEEARRIERGETLSSTILPEEAGILVRALSSGWVEFVEEIDLWIPFSVTNREHDDKPDGEDEFDKEMLPGRQLPPECHGELHTDYGGAAVRWGLTHHKESAYECCMACLDQAKRAKPGQKKCNIWVYC...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

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