Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003924`

染色体: Chr02 坐标: 61318611-61324376 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003924`
名称	SmilChr02G003924
描述	protein DETOXIFICATION 27-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61318611 - 61324376 / `+`

ID 对照

NCBI Gene ID	`LOC131010877`
GeneID	`131010877`
locus_tag	`-`
NCBI Name	`LOC131010877`
原始查询	`SmilChr02G003924`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 27-like
产物	protein DETOXIFICATION 27-like
Arabidopsis	`AT5G65380` (AT5G65380) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:836663] identity=63.6; qcov=0.911; evalue=0; confidence=high
Rice	`Os09g0468000` - identity=56; qcov=0.962; evalue=3.76e-177; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131010877

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole membrane	液泡膜	0.80000	`XP_057794550.1`
2	Cell membrane	细胞膜	0.60000	`XP_057794550.1`
3	Vacuole	液泡	0.60000	`XP_057794550.1`
4	Nucleus	细胞核	0.00000	`XP_057794550.1`
5	Chromosome	染色体	0.00000	`XP_057794550.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61318874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B136,B95,D3
`Chr2:61318916`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B51
`Chr2:61318930`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B16,B91,C18,C50
`Chr2:61318989`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	C2,C32,C68
`Chr2:61319112`	`C`	`CA`	1bp_insertion	frameshift_variant	18	A21,A8,B114,B115,B136,B17,B62,B8,B85,B95,C2,C31,C32,C33,C46,C68,C80,D3
`Chr2:61319120`	`G`	`GA`	1bp_insertion	frameshift_variant	2	B118,C16
`Chr2:61319120`	`G`	`GA`	1bp_insertion	CDS_variant	2	B118,C16
`Chr2:61319123`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B118,C16
`Chr2:61319272`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	C2,C32
`Chr2:61319622`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:61319651`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B94
`Chr2:61320321`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794550.1

516 aa

258

516

MatE

PF01554 MatE 107-230 aa PF01554 MatE 292-452 aa

XP_057794551.1

494 aa

247

494

MatE

PF01554 MatE 48-208 aa PF01554 MatE 270-430 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794550.1`	Pfam	`PF01554`	MatE	Family	107	230	2.7e-51	174.2	MatE
`XP_057794550.1`	Pfam	`PF01554`	MatE	Family	292	452	2.7e-51	174.2	MatE
`XP_057794551.1`	Pfam	`PF01554`	MatE	Family	48	208	1e-55	188.6	MatE
`XP_057794551.1`	Pfam	`PF01554`	MatE	Family	270	430	1e-55	188.6	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938567.1
ATTCGACTGGTGCCCGTGTCTTATTGAATTGGGACGGAGAGAGCGCATATTTTTTTAAAAATTGTTGCGATATCGTTTTTCGCTTCTCCGGACTCGGCATCATCGTGGATTTGTAATCAATAAGTCTATCGGCGATTGCAACGGCTACAACAATACATAAACAAGAGGAAATTCTACAGAAACTCACCTCTCTCTCTCTCTCTCTAAAAACATGGAAATATCGAACCCAAGTGATGACCTAAACCAACCCCTTCTCCCAT...

XM_057938568.1
GACTGGTGCCCGTGTCTTATTGAATTGGGACGGAGAGAGCGCATATTTTTTTAAAAATTGTTGCGATATCGTTTTTCGCTTCTCCGGACTCGGCATCATCGTGGATTTGTAATCAATAAGTCTATCGGCGATTGCAACGGCTACAACAATACATAAACAAGAGGAAATTCTACAGAAACTCACCTCTCTCTCTCTCTCTCTAAAAACATGGAAATATCGAACCCAAGTGATGACCTAAACCAACCCCTTCTCCCATCAGC...

CDS

2 records

下载 CDS FASTA

LOC131010877
ATGGAAATATCGAACCCAAGTGATGACCTAAACCAACCCCTTCTCCCATCAGCAACCAAAGAAATCCCCCAAAAAAACCCTAAGAACAGCGTGGCGGCGGCGTGGTGGGAGGAATCGAAGAAGCTGTGGCATGTGGTGGGGCCCACCGTGGTCTCCCGCGTGTCGAACGCCACCATGAACATCATCACGCAGGCCTTCGCCGGCCACCTCGGCGACCTGGAGCTCGCCTCCATCTCCATCGCCAACAACGTCATCGTCGG...

Protein

2 records

下载 Protein FASTA

XP_057794550.1
MEISNPSDDLNQPLLPSATKEIPQKNPKNSVAAAWWEESKKLWHVVGPTVVSRVSNATMNIITQAFAGHLGDLELASISIANNVIVGFNWGLLVTQNKKRRKLICVILKMILCPQLGMASALETLCGQAFGAKKYGMLGIYMQRSWIVLFLCCFLLLPLYALAAPILKLMGQPDDVAEQAGEVALWLIPLHFSFAFQFPLQRFLQSQLKTAPLIWVPLLALVVHAVLNWVLVSKLEMGVVGIAVVLDISWWLLVLGMYAY...

XP_057794551.1
MEISNPSDDLNQPLLPSATKEIPQKNPKNSVAAAWWEESKKLWHVVGPTVVSRVSNATMNIITQAFAGHLGDLELASISIANNVIVGFNWGLLLGMASALETLCGQAFGAKKYGMLGIYMQRSWIVLFLCCFLLLPLYALAAPILKLMGQPDDVAEQAGEVALWLIPLHFSFAFQFPLQRFLQSQLKTAPLIWVPLLALVVHAVLNWVLVSKLEMGVVGIAVVLDISWWLLVLGMYAYVAFGGCPLTWTGFSLQAFSGLV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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