当前解析结果
SmilChr02G003945| 统一新 Gene ID | SmilChr02G003945 |
|---|---|
| 名称 | SmilChr02G003945 |
| 描述 | uncharacterized SmilChr02G003945 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61591200 - 61594870 / - |
| NCBI Gene ID | LOC131010873 |
|---|---|
| GeneID | 131010873 |
| locus_tag | - |
| NCBI Name | LOC131010873 |
| 原始查询 | SmilChr02G003945 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:844159]; symbol=AT1G78230; hit=AT1G78230; species=arabidopsis; confidence=high |
| 产物 | Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:844159]; symbol=AT1G78230; hit=AT1G78230; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G78230 (AT1G78230)Outer arm dynein light chain 1 protein [Source:NCBI gene (formerly Entrezgene);Acc:844159] identity=51.5; qcov=0.735; evalue=1.98e-148; confidence=high |
| Rice | Os03g0190300 (OJ1217B09.19)- identity=51.1; qcov=0.679; evalue=2.33e-129; confidence=high |
| GO | GO:0005737 (cytoplasm); GO:0019901 (protein kinase binding) |
| KEGG | - |
| Pfam | PF00560 (LRR_1); PF12799 (LRR_4); PF13516 (LRR_6); PF13855 (LRR_8) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010873 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057794545.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794545.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794545.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794545.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794545.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61591566 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C57 |
Chr2:61591663 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:61591681 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C62 |
Chr2:61591703 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B33,B40,C40 |
Chr2:61591864 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B118,C71 |
Chr2:61591968 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B68 |
Chr2:61592010 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C2,C32,C68 |
Chr2:61592333 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C83 |
Chr2:61592407 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:61592458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B33,B40 |
Chr2:61592463 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B56,B96,D10 |
Chr2:61592492 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B53,B55,C8 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794545.1PF13855
LRR_8 476-531 aa
PF12799
LRR_4 499-538 aa
PF00560
LRR_1 520-540 aa
PF13855
LRR_8 520-576 aa
PF13516
LRR_6 565-577 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794545.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 476 | 531 | 1.8e-17 | 63.6 | Leucine rich repeat |
XP_057794545.1 |
Pfam | PF12799 |
LRR_4 | Repeat | 499 | 538 | 1e-16 | 61.3 | Leucine Rich repeats (2 copies) |
XP_057794545.1 |
Pfam | PF00560 |
LRR_1 | Repeat | 520 | 540 | 2.1e-08 | 33.4 | Leucine Rich Repeat |
XP_057794545.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 520 | 576 | 1.8e-17 | 63.6 | Leucine rich repeat |
XP_057794545.1 |
Pfam | PF13516 |
LRR_6 | Repeat | 565 | 577 | 3e-06 | 27.6 | Leucine Rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。