Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003950`

染色体: Chr02 坐标: 61670866-61674951 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003950`
名称	SmilChr02G003950
描述	protein DETOXIFICATION 27-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61670866 - 61674951 / `+`

ID 对照

NCBI Gene ID	`LOC131010884`
GeneID	`131010884`
locus_tag	`-`
NCBI Name	`LOC131010884`
原始查询	`SmilChr02G003950`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	protein DETOXIFICATION 27-like
产物	protein DETOXIFICATION 27-like
Arabidopsis	`AT5G65380` (AT5G65380) MATE efflux family protein [Source:NCBI gene (formerly Entrezgene);Acc:836663] identity=53.6; qcov=0.824; evalue=8.98e-142; confidence=high
Rice	`Os08g0480000` (OJ1113_A10.30-1) - identity=52.2; qcov=0.828; evalue=1.9e-137; confidence=high
GO	GO:0015297 (antiporter activity); GO:0016020 (membrane); GO:0042910 (xenobiotic transmembrane transporter activity); GO:1990961 (xenobiotic detoxification by transmembrane export across the plasma membrane)
KEGG	-
Pfam	PF01554 (MatE)
InterPro	-
eggNOG	-
NR	GeneID:131010884

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Vacuole	液泡	1.00000	`XP_057794564.1`
2	Vacuole membrane	液泡膜	1.00000	`XP_057794564.1`
3	Cell membrane	细胞膜	0.20000	`XP_057794563.1`
4	Nucleus	细胞核	0.00000	`XP_057794563.1`
5	Chromosome	染色体	0.00000	`XP_057794563.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61671025`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr2:61671150`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C4
`Chr2:61672034`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B126,B51
`Chr2:61672078`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	B105,B56,B96,C51
`Chr2:61672092`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B35,B84
`Chr2:61672365`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:61672440`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C83
`Chr2:61672455`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B63
`Chr2:61672629`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C71
`Chr2:61672802`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B98
`Chr2:61673539`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40
`Chr2:61673567`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B56,B96

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794563.1

483 aa

242

483

MatE

PF01554 MatE 35-195 aa PF01554 MatE 257-415 aa

XP_057794564.1

460 aa

230

460

MatE

PF01554 MatE 57-172 aa PF01554 MatE 234-392 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794563.1`	Pfam	`PF01554`	MatE	Family	35	195	1.6e-49	168.4	MatE
`XP_057794563.1`	Pfam	`PF01554`	MatE	Family	257	415	1.6e-49	168.4	MatE
`XP_057794564.1`	Pfam	`PF01554`	MatE	Family	57	172	2e-41	142.1	MatE
`XP_057794564.1`	Pfam	`PF01554`	MatE	Family	234	392	2e-41	142.1	MatE

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938580.1
TACCCATACAACAATATGGCATAAAAGGAACCTTAAAAGTGATAGTAATACTCTGTTTATATTTTTGTAACACACGTGCAAGTTGAGATTTGAAATGATCGTGAACGCAATCGCAAGAAGAAGCCGATGGTGAAGCAACCCTTGCTACCCTCAACCTCCGGCGACGAAAGACGCCGCCCCCGGTCGCCTGGATGTGTGGAGTTGAAGAAGCTATGGCAAATAGCAGCTCCCTCAATCTTTTGTCGGCTCGCTATGTTTTC...

XM_057938581.1
ATACTCTGTTTATATTTTTGTAACACACGTGCAAGTTGAGATTTGAAATGATCGTGAACGCAATCGCAAGAAGAAGCCGATGGTGAAGCAACCCTTGCTACCCTCAACCTCCGGCGACGAAAGACGCCGCCCCCGGTCGCCTGGATGTGTGGAGTTGAAGAAGCTATGGCAAATAGCAGCTCCCTCAATCTTTTGTCGGCTCGCTATGTTTTCTCTCACTATTATTACCCAATCTCTCGCCGGCCACCTCGGCCAAAATC...

CDS

2 records

下载 CDS FASTA

LOC131010884
ATGGTGAAGCAACCCTTGCTACCCTCAACCTCCGGCGACGAAAGACGCCGCCCCCGGTCGCCTGGATGTGTGGAGTTGAAGAAGCTATGGCAAATAGCAGCTCCCTCAATCTTTTGTCGGCTCGCTATGTTTTCTCTCACTATTATTACCCAATCTCTCGCCGGCCACCTCGGCCAAAATCAGCTCGCCGCCATCTCCATTGTCACCACCGTCATCATCTCCATCACCTTTGGCTTCTTGCTAGGAATGGCTAGTGTGCT...

LOC131010884
ATGTGTGGAGTTGAAGAAGCTATGGCAAATAGCAGCTCCCTCAATCTTTTGTCGGCTCGCTATGTTTTCTCTCACTATTATTACCCAATCTCTCGCCGGCCACCTCGGCCAAAATCAGCTCGCCGCCATCTCCATTGTCACCACCGTCATCATCTCCATCACCTTTGGCTTCTTGGAATGGCTAGTGTGCTTGAAATGCTGTGTGGACAAGCCTATGGAGGAAAGCAATACTACCTGTTGGGTATATATTTGCAACGCTC...

Protein

2 records

下载 Protein FASTA

XP_057794563.1
MVKQPLLPSTSGDERRRPRSPGCVELKKLWQIAAPSIFCRLAMFSLTIITQSLAGHLGQNQLAAISIVTTVIISITFGFLLGMASVLEMLCGQAYGGKQYYLLGIYLQRSWVVLFLSSIALLPLFIFLEPILKLVGQPELLAELAGQVALWLIPMHLSFVFQFTLTRFLQCQLKTSVVAWVCGAVLVIHVLISWVFVYNMRVGIVGIALTLDFSWWMSVVGMFIYSVCGWCPNSWTGFSTEAFTDLWDFFKLSLASGVML...

XP_057794564.1
MCGVEEAMANSSSLNLLSARYVFSHYYYPISRRPPRPKSARRHLHCHHRHHLHHLWLLGMASVLEMLCGQAYGGKQYYLLGIYLQRSWVVLFLSSIALLPLFIFLEPILKLVGQPELLAELAGQVALWLIPMHLSFVFQFTLTRFLQCQLKTSVVAWVCGAVLVIHVLISWVFVYNMRVGIVGIALTLDFSWWMSVVGMFIYSVCGWCPNSWTGFSTEAFTDLWDFFKLSLASGVMLALENFYFRMLVLVSSIKGAEVAV...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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