当前解析结果
SmilChr02G003954| 统一新 Gene ID | SmilChr02G003954 |
|---|---|
| 名称 | SmilChr02G003954 |
| 描述 | uncharacterized SmilChr02G003954 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61691589 - 61694216 / - |
| NCBI Gene ID | LOC131010907 |
|---|---|
| GeneID | 131010907 |
| locus_tag | - |
| NCBI Name | LOC131010907 |
| 原始查询 | SmilChr02G003954 |
| 来源 | GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | N-lysine methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:840483]; symbol=AT1G35780; hit=AT1G35780; species=arabidopsis; confidence=high |
| 产物 | N-lysine methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:840483]; symbol=AT1G35780; hit=AT1G35780; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G35780 (AT1G35780)N-lysine methyltransferase [Source:NCBI gene (formerly Entrezgene);Acc:840483] identity=65.3; qcov=1.02; evalue=2.16e-125; confidence=high |
| Rice | Os02g0574600- identity=60.6; qcov=1.08; evalue=6.06e-115; confidence=high |
| GO | - |
| KEGG | - |
| Pfam | PF13266 (DUF4057) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010907 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoskeleton | 细胞骨架 | 1.00000 | XP_057794595.1 |
| 2 | Cell projection | 细胞突起 | 1.00000 | XP_057794595.1 |
| 3 | Cytosol | 细胞质基质 | 0.60000 | XP_057794595.1 |
| 4 | Cytoplasm | 细胞质 | 0.20000 | XP_057794595.1 |
| 5 | Axon | Axon | 0.20000 | XP_057794595.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61691793 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B78 |
Chr2:61691934 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B99 |
Chr2:61692401 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B91,C18 |
Chr2:61692486 |
TC |
T |
1bp_deletion | frameshift_variant | 1 | B25 |
Chr2:61692486 |
TC |
T |
1bp_deletion | CDS_variant | 1 | B25 |
Chr2:61692555 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C28 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794595.1PF13266
DUF4057 3-288 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794595.1 |
Pfam | PF13266 |
DUF4057 | Family | 3 | 288 | 3.1e-140 | 467.8 | Protein of unknown function (DUF4057) |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。