Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003956`

染色体: Chr02 坐标: 61735984-61739536 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003956`
名称	SmilChr02G003956
描述	uncharacterized SmilChr02G003956
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61735984 - 61739536 / `+`

ID 对照

NCBI Gene ID	`LOC131010868`
GeneID	`131010868`
locus_tag	`-`
NCBI Name	`LOC131010868`
原始查询	`SmilChr02G003956`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os12g0597300; species=rice; confidence=low
产物	hit=Os12g0597300; species=rice; confidence=low
Arabidopsis	`AT1G06740` (MUG3) MuDR family transposase [Source:NCBI gene (formerly Entrezgene);Acc:3766669] identity=27.2; qcov=0.662; evalue=4.79e-67; confidence=low
Rice	`Os12g0597300` - identity=30.2; qcov=0.675; evalue=4.81e-75; confidence=low
GO	GO:0003676 (nucleic acid binding); GO:0008270 (zinc ion binding)
KEGG	-
Pfam	PF00872 (Transposase_mut); PF03108 (DBD_Tnp_Mut); PF04434 (SWIM); PF10551 (MULE)
InterPro	-
eggNOG	-
NR	GeneID:131010868

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794539.1`
2	Chromosome	染色体	0.00000	`XP_057794539.1`
3	Centromere	着丝粒	0.00000	`XP_057794539.1`
4	Chromatin	染色质	0.00000	`XP_057794539.1`
5	Telomere	端粒	0.00000	`XP_057794539.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61736762`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B109,B30,B90,C16,C39
`Chr2:61736767`	`AG`	`A`	1bp_deletion	frameshift_variant	114	A15,A16,A19,A21,A23,A24,A3,A4,A5,A8,A9,B10,B100,B102,B104,B109,B110,B111,B113,B117,B120,B123,B125,B126,B128,B130,B131,B134,B18,B20,B22,B23,B25,B27,B33,B34,B4,B40,B43,B46,B5,B58,B61,B63,B65,B66,B68,B7,B71,B72,B73,B74,B78,B79,B8,B83,B84,B86,B88,B9,B90,B92,B93,B98,C1,C11,C14,C16,C18,C19,C2,C20,C21,C22,C24,C25,C27,C28,C29,C3,C30,C31,C35,C37,C38,C39,C4,C43,C45,C46,C5,C53,C54,C55,C60,C61,C62,C66,C70,C71,C73,C74,C75,C78,C8,C80,C81,C82,C87,D1,D10,D2,D6,D7
`Chr2:61736791`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B72
`Chr2:61736833`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B107
`Chr2:61736842`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C45
`Chr2:61736844`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B109,B90,C16,C39
`Chr2:61736902`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C8
`Chr2:61736989`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B14
`Chr2:61737054`	`C`	`T`	EMS_canonical_SNV	CDS_variant	5	B128,B130,B34,B88,C26
`Chr2:61737056`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B68,C72
`Chr2:61737073`	`CA`	`C`	1bp_deletion	frameshift_variant	1	C86
`Chr2:61737073`	`CA`	`C`	1bp_deletion	CDS_variant	1	C86

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794539.1

859 aa

430

859

DBD_Tnp_Mut

MULE

Transposase_mut

SWIM

PF03108 DBD_Tnp_Mut 257-312 aa PF10551 MULE 452-546 aa PF00872 Transposase_mut 470-574 aa PF04434 SWIM 696-726 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794539.1`	Pfam	`PF03108`	DBD_Tnp_Mut	Family	257	312	4e-06	27.1	MuDR family transposase
`XP_057794539.1`	Pfam	`PF10551`	MULE	Domain	452	546	1.6e-20	74.0	MULE transposase domain
`XP_057794539.1`	Pfam	`PF00872`	Transposase_mut	Family	470	574	8.9e-10	38.7	Transposase, Mutator family
`XP_057794539.1`	Pfam	`PF04434`	SWIM	Domain	696	726	5.1e-07	29.8	SWIM zinc finger

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XR_009096690.1
TTTACCCTATTTGAAAAAGGAAACATAAAATGTACCCACCCCAAAATAAACATATAAAATGTACCCAATTGAGTGTTGAAAAGACTAGCATGCCCTTATTTTTCTTTTTGTTTTATTTTTGTTTTTCACATTTATTTAATGCCATTATGTTTCTTTTTCTTTTAATTTTCGATTTTCACATTTGAAGGCTGAGTAAAACGAAAATTGGTTGCTGCAACTTCAACATTAAACACAAAACCAAAACACTTTTGAAATATTCA...

XM_057938556.1
TGAGCCAATTATGTATGGTTGTATCATATGGTGGTTCATGGAATAACGACAAGTATGAGGGGGGGGCATCGTGAATATCTCCGTTTTCCATCATCGGGCATGACATTCAACACATTAGTAAGTCGGATTCAAGGGATTGTTTGTTTAGATACAAATATTTATGATTATTGGATATATTCATATATGAAAACTCCGGAAGATGAAACTTTGAGAATCAAGATACTAGATGATGATGATTTAAAATTAGTGATTGATTCTTT...

CDS

1 records

下载 CDS FASTA

LOC131010868
ATGGTGGTTCATGGAATAACGACAAGTATGAGGGGGGGGCATCGTGAATATCTCCGTTTTCCATCATCGGGCATGACATTCAACACATTAGTAAGTCGGATTCAAGGGATTGTTTGTTTAGATACAAATATTTATGATTATTGGATATATTCATATATGAAAACTCCGGAAGATGAAACTTTGAGAATCAAGATACTAGATGATGATGATTTAAAATTAGTGATTGATTCTTTTCAAGTGCCGAAGATCTTTGTATCAGT...

Protein

1 records

下载 Protein FASTA

XP_057794539.1
MVVHGITTSMRGGHREYLRFPSSGMTFNTLVSRIQGIVCLDTNIYDYWIYSYMKTPEDETLRIKILDDDDLKLVIDSFQVPKIFVSVVQKINVPSSSFVNMLNSQVTNVNMKQPMFETLQNPQRNMDQLIVPRHDVQIENVAANNFERIANNVVDDEHGVDWGYNENVDSLDSLGGDDDDDDDDDDDDDDDGDGDDDSRNRHNVPSLSSSFVDVDVEDDIWDRQIGHGQQWIIPGALYQASLPCEELGITKGFNRDTLSE...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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