Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003969`

染色体: Chr02 坐标: 61872194-61874227 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003969`
名称	SmilChr02G003969
描述	probable trehalose-phosphate phosphatase 6
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	61872194 - 61874227 / `+`

ID 对照

NCBI Gene ID	`LOC131010895`
GeneID	`131010895`
locus_tag	`-`
NCBI Name	`LOC131010895`
原始查询	`SmilChr02G003969`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable trehalose-phosphate phosphatase 6
产物	probable trehalose-phosphate phosphatase 6
Arabidopsis	`AT2G22190` (TPPE) Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:816753] identity=64.9; qcov=0.87; evalue=8.29e-147; confidence=high
Rice	`Os08g0409100` (OsTPP6) - identity=58.5; qcov=1.04; evalue=2.31e-149; confidence=high
GO	GO:0004805 (trehalose-phosphatase activity); GO:0005992 (trehalose biosynthetic process)
KEGG	smil00500 (Starch and sucrose metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage)); smil01110 (Biosynthesis of secondary metabolites - Salvia miltiorrhiza (redroot sage))
Pfam	PF02358 (Trehalose_PPase)
InterPro	-
eggNOG	-
NR	GeneID:131010895

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytosol	细胞质基质	1.00000	`XP_057794581.1`
2	Cytoplasm	细胞质	0.60000	`XP_057794580.1`
3	Nucleus	细胞核	0.00000	`XP_057794580.1`
4	Chromosome	染色体	0.00000	`XP_057794580.1`
5	Centromere	着丝粒	0.00000	`XP_057794580.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:61872795`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B100,B70,B95,C71,D3
`Chr2:61873335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:61873366`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C82
`Chr2:61873381`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B78,C36
`Chr2:61873677`	`G`	`GC`	1bp_insertion	frameshift_variant	1	A15
`Chr2:61873677`	`G`	`GC`	1bp_insertion	CDS_variant	1	A15
`Chr2:61873787`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B132,B25,C33
`Chr2:61873887`	`AT`	`A`	1bp_deletion	frameshift_variant	44	A1,A6,A7,B10,B119,B123,B128,B133,B137,B19,B29,B30,B41,B5,B51,B55,B6,B60,B66,B72,B73,B75,B77,B8,B80,B84,B86,B87,B99,C15,C18,C23,C28,C30,C36,C37,C47,C52,C67,C75,C77,C82,C86,D11
`Chr2:61873889`	`CT`	`C`	1bp_deletion	frameshift_variant	155	A10,A13,A14,A15,A16,A18,A19,A2,A20,A21,A22,A24,A25,A5,A8,A9,B1,B102,B103,B105,B106,B107,B109,B111,B112,B113,B114,B115,B117,B12,B121,B122,B124,B125,B126,B127,B129,B13,B130,B131,B132,B134,B136,B138,B14,B140,B16,B21,B26,B27,B3,B33,B34,B37,B38,B39,B4,B47,B48,B50,B52,B53,B54,B56,B57,B58,B59,B62,B64,B65,B67,B68,B69,B7,B71,B74,B79,B81,B82,B83,B85,B88,B9,B90,B91,B92,B93,B94,B96,B97,B98,C10,C11,C12,C13,C16,C19,C2,C20,C21,C22,C25,C26,C27,C29,C3,C31,C32,C33,C34,C35,C38,C39,C40,C42,C43,C44,C46,C49,C5,C50,C53,C55,C57,C59,C6,C61,C62,C64,C68,C69,C7,C70,C72,C73,C74,C76,C79,C8,C80,C81,C83,C84,C85,C87,C9,D1,D10,D2,D4,D5,D6,D7,D8,D9
`Chr2:61873892`	`TC`	`T`	1bp_deletion	frameshift_variant	28	A18,A3,A5,A7,B10,B100,B108,B11,B131,B138,B17,B2,B24,B35,B53,B56,B69,B71,B78,B92,B96,C1,C13,C36,C45,C54,C7,D5
`Chr2:61873916`	`T`	`TG`	1bp_insertion	frameshift_variant	52	A19,A25,B100,B101,B110,B111,B112,B114,B120,B129,B132,B139,B15,B18,B22,B31,B36,B40,B42,B43,B44,B45,B48,B57,B61,B63,B70,B86,B87,B88,B97,C18,C22,C23,C29,C31,C33,C42,C49,C51,C55,C56,C58,C6,C64,C65,C66,C70,C71,C78,C79,C83
`Chr2:61873930`	`T`	`TG`	1bp_insertion	frameshift_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794580.1

368 aa

184

368

Trehalose_PPase

PF02358 Trehalose_PPase 98-333 aa

XP_057794581.1

354 aa

177

354

Trehalose_PPase

PF02358 Trehalose_PPase 98-333 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794580.1`	Pfam	`PF02358`	Trehalose_PPase	Family	98	333	1.6e-69	234.3	Trehalose-phosphatase
`XP_057794581.1`	Pfam	`PF02358`	Trehalose_PPase	Family	98	333	1.4e-69	234.5	Trehalose-phosphatase

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938598.1
CCCATCTTCCCTTTGTCACTTGTGATTTGTTGTCTCACTTCTCCCACAATTTTTCTTGCTCTGCAGAAGAGAAAAATCCAAATCTAGAAGGCAGCATTCCTCCTCTTGTTCCCAAGTTTTTGCACCCCATTTTCAACCAAAACTTCCACATATTTTCCTGGTTTTTGTGGAACAGAAGCAGGCTTGTGAATGACGAACCAGAAAATGGTGATCCCCGACGCGAAATCGGGCATTCCGATGGGGTTCGGCGTGGCAATGCC...

XM_057938597.1
TTCCCTTTGTCACTTGTGATTTGTTGTCTCACTTCTCCCACAATTTTTCTTGCTCTGCAGAAGAGAAAAATCCAAATCTAGAAGGCAGCATTCCTCCTCTTGTTCCCAAGTTTTTGCACCCCATTTTCAACCAAAACTTCCACATATTTTCCTGGTTTTTGTGGAACAGAAGCAGGCTTGTGAATGACGAACCAGAAAATGGTGATCCCCGACGCGAAATCGGGCATTCCGATGGGGTTCGGCGTGGCAATGCCCGTTTT...

CDS

2 records

下载 CDS FASTA

LOC131010895
ATGACGAACCAGAAAATGGTGATCCCCGACGCGAAATCGGGCATTCCGATGGGGTTCGGCGTGGCAATGCCCGTTTTCCCAGCCAAGGGAAACCGGTTTCCATTGAAGAAGCTCTTCAAGAATGCCAAGGCGGCAAGGATCAATGCCTTGCTCGACTCCATGAGGGCCTCCTCGCCCACCAGGAGGCCCTCCGATGCCGACGACCATGCCTCTTGGAACCTTGAGCACCCGTCGGCCCTCAGCATGTTCGACGAGATCGC...

Protein

2 records

下载 Protein FASTA

XP_057794580.1
MTNQKMVIPDAKSGIPMGFGVAMPVFPAKGNRFPLKKLFKNAKAARINALLDSMRASSPTRRPSDADDHASWNLEHPSALSMFDEIASAAKGKQIVVFLDYDGTLSPIVPDPDRAFITTEMREAVRDVAKLFPTAIVSGRCRAKVYDFVQLSELSYAGSHGMDIKAPSKGHRSQRKGNESVLCQPAREFLPIIEEVYRGLIEQVKQIPGANVEHNRFCLSVHYRCVEEKRWVELADQVKVVMKEYPQLRVSHGRKVFEIR...

XP_057794581.1
MTNQKMVIPDAKSGIPMGFGVAMPVFPAKGNRFPLKKLFKNAKAARINALLDSMRASSPTRRPSDADDHASWNLEHPSALSMFDEIASAAKGKQIVVFLDYDGTLSPIVPDPDRAFITTEMREAVRDVAKLFPTAIVSGRCRAKVYDFVQLSELSYAGSHGMDIKAPSKGHRSQRKGNESVLCQPAREFLPIIEEVYRGLIEQVKQIPGANVEHNRFCLSVHYRCVEEKRWVELADQVKVVMKEYPQLRVSHGRKVFEIR...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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