Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G003970

染色体: Chr02 坐标: 61876547-61876987 链方向: - 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G003970
名称SmilChr02G003970
描述uncharacterized SmilChr02G003970
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向61876547 - 61876987 / -

ID 对照

NCBI Gene IDLOC131009848
GeneID131009848
locus_tag-
NCBI NameLOC131009848
原始查询SmilChr02G003970

查看完整 ID 对照表

功能注释

来源GFF basic annotation; Arabidopsis/Rice homolog
描述Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121]; symbol=AT3G25270; hit=AT3G25270; species=arabidopsis; confidence=low
产物Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121]; symbol=AT3G25270; hit=AT3G25270; species=arabidopsis; confidence=low
ArabidopsisAT3G25270 (AT3G25270)
Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121]
identity=29.5; qcov=0.719; evalue=5.6e-07; confidence=low
RiceOs01g0685100
-
identity=27.9; qcov=0.884; evalue=6.59e-06; confidence=low
GO-
KEGG-
Pfam-
InterPro-
eggNOG-
NRGeneID:131009848

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Cytoplasm 细胞质 0.80000 XP_057793236.1
2 Endoplasmic reticulum 内质网 0.20000 XP_057793236.1
3 Endoplasmic reticulum membrane 内质网膜 0.20000 XP_057793236.1
4 Nucleus 细胞核 0.00000 XP_057793236.1
5 Chromosome 染色体 0.00000 XP_057793236.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:61876574 C T EMS_canonical_SNV stop_gained 1 C43
Chr2:61876574 C T EMS_canonical_SNV CDS_variant 1 C43
Chr2:61876583 G A EMS_canonical_SNV CDS_variant 2 B27,C65
Chr2:61876589 C T EMS_canonical_SNV CDS_variant 1 B39
Chr2:61876681 G A EMS_canonical_SNV stop_gained 12 A11,B101,B122,B131,B24,B9,C28,C68,C74,C83,C87,D7
Chr2:61876699 TCC T 2bp_deletion frameshift_variant 6 A14,B109,B16,B63,B82,B83
Chr2:61876706 T TAA 2bp_insertion frameshift_variant 6 A14,B109,B16,B63,B82,B83
Chr2:61876719 C CA 1bp_insertion frameshift_variant 3 A25,B15,B59
Chr2:61876719 C CA 1bp_insertion CDS_variant 3 A25,B15,B59
Chr2:61876725 A AC 1bp_insertion frameshift_variant 34 A3,A6,B107,B11,B117,B118,B124,B126,B127,B15,B38,B46,B53,B59,B66,B73,B78,B80,B86,B89,C11,C26,C27,C36,C42,C54,C55,C59,C63,C67,C78,D11,D8,D9
Chr2:61876728 CT C 1bp_deletion frameshift_variant 33 A3,A6,B107,B11,B117,B118,B124,B126,B127,B15,B38,B46,B53,B59,B66,B73,B78,B80,B86,B89,C11,C26,C27,C36,C42,C54,C55,C59,C63,C67,C78,D11,D9
Chr2:61876795 G GT 1bp_insertion frameshift_variant 1 C23

进入 EMS 突变库

预测功能结构域

当前发布数据中,此基因没有可展示的 Pfam 结构域命中。

进入结构域查询

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937253.1
ATGGCTACTTGCGATAACCTCGTTCGAAGACATGTACTCAACACTTCTCCGGAAACGGACTGCATCTTTTGTCATTCTCAGATGGAGGATCTGGAGCATATTCTCTTTCTTTGTGAAAAAACAGGGGAGATTTGGAATGCTTTTCTTCGGTGGATTGGTAAGAGCTCGGCTTTACATCACAATGCAAAAGAACACTTCCTTGCTTTCATTGGTCTTGGGAATAAAGCTGAAACTCGATTCCTTACTGGTTTGTGGATTAG...

CDS

1 records

下载 CDS FASTA
LOC131009848
ATGGCTACTTGCGATAACCTCGTTCGAAGACATGTACTCAACACTTCTCCGGAAACGGACTGCATCTTTTGTCATTCTCAGATGGAGGATCTGGAGCATATTCTCTTTCTTTGTGAAAAAACAGGGGAGATTTGGAATGCTTTTCTTCGGTGGATTGGTAAGAGCTCGGCTTTACATCACAATGCAAAAGAACACTTCCTTGCTTTCATTGGTCTTGGGAATAAAGCTGAAACTCGATTCCTTACTGGTTTGTGGATTAG...

Protein

1 records

下载 Protein FASTA
XP_057793236.1
MATCDNLVRRHVLNTSPETDCIFCHSQMEDLEHILFLCEKTGEIWNAFLRWIGKSSALHHNAKEHFLAFIGLGNKAETRFLTGLWISIVWSIWKERNNCIFKQGVWNKDKLVLEIKMKLWCWKMIFKLEAPVLDLQAWLSLEGILS

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

跳转到基因组浏览器