当前解析结果
SmilChr02G003970| 统一新 Gene ID | SmilChr02G003970 |
|---|---|
| 名称 | SmilChr02G003970 |
| 描述 | uncharacterized SmilChr02G003970 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61876547 - 61876987 / - |
| NCBI Gene ID | LOC131009848 |
|---|---|
| GeneID | 131009848 |
| locus_tag | - |
| NCBI Name | LOC131009848 |
| 原始查询 | SmilChr02G003970 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121]; symbol=AT3G25270; hit=AT3G25270; species=arabidopsis; confidence=low |
| 产物 | Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121]; symbol=AT3G25270; hit=AT3G25270; species=arabidopsis; confidence=low |
| Arabidopsis | AT3G25270 (AT3G25270)Ribonuclease H-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:822121] identity=29.5; qcov=0.719; evalue=5.6e-07; confidence=low |
| Rice | Os01g0685100- identity=27.9; qcov=0.884; evalue=6.59e-06; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009848 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057793236.1 |
| 2 | Endoplasmic reticulum | 内质网 | 0.20000 | XP_057793236.1 |
| 3 | Endoplasmic reticulum membrane | 内质网膜 | 0.20000 | XP_057793236.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057793236.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057793236.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61876574 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | C43 |
Chr2:61876574 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C43 |
Chr2:61876583 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B27,C65 |
Chr2:61876589 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B39 |
Chr2:61876681 |
G |
A |
EMS_canonical_SNV | stop_gained | 12 | A11,B101,B122,B131,B24,B9,C28,C68,C74,C83,C87,D7 |
Chr2:61876699 |
TCC |
T |
2bp_deletion | frameshift_variant | 6 | A14,B109,B16,B63,B82,B83 |
Chr2:61876706 |
T |
TAA |
2bp_insertion | frameshift_variant | 6 | A14,B109,B16,B63,B82,B83 |
Chr2:61876719 |
C |
CA |
1bp_insertion | frameshift_variant | 3 | A25,B15,B59 |
Chr2:61876719 |
C |
CA |
1bp_insertion | CDS_variant | 3 | A25,B15,B59 |
Chr2:61876725 |
A |
AC |
1bp_insertion | frameshift_variant | 34 | A3,A6,B107,B11,B117,B118,B124,B126,B127,B15,B38,B46,B53,B59,B66,B73,B78,B80,B86,B89,C11,C26,C27,C36,C42,C54,C55,C59,C63,C67,C78,D11,D8,D9 |
Chr2:61876728 |
CT |
C |
1bp_deletion | frameshift_variant | 33 | A3,A6,B107,B11,B117,B118,B124,B126,B127,B15,B38,B46,B53,B59,B66,B73,B78,B80,B86,B89,C11,C26,C27,C36,C42,C54,C55,C59,C63,C67,C78,D11,D9 |
Chr2:61876795 |
G |
GT |
1bp_insertion | frameshift_variant | 1 | C23 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。