当前解析结果
SmilChr02G003971| 统一新 Gene ID | SmilChr02G003971 |
|---|---|
| 名称 | SmilChr02G003971 |
| 描述 | uncharacterized SmilChr02G003971 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 61879309 - 61880085 / - |
| NCBI Gene ID | LOC131009849 |
|---|---|
| GeneID | 131009849 |
| locus_tag | - |
| NCBI Name | LOC131009849 |
| 原始查询 | SmilChr02G003971 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os06g0484800; species=rice; confidence=low |
| 产物 | hit=Os06g0484800; species=rice; confidence=low |
| Arabidopsis | AT1G43760 (AT1G43760)DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:840968] identity=25.2; qcov=0.822; evalue=6.66e-13; confidence=low |
| Rice | Os06g0484800- identity=31.9; qcov=0.768; evalue=1.21e-14; confidence=low |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009849 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 1.00000 | XP_057793237.1 |
| 2 | Nucleus | 细胞核 | 0.80000 | XP_057793237.1 |
| 3 | Cytosol | 细胞质基质 | 0.40000 | XP_057793237.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793237.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793237.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:61879339 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B121,B84,B99,C44 |
Chr2:61879389 |
C |
CAT |
2bp_insertion | frameshift_variant | 4 | B30,C47,C5,C59 |
Chr2:61879389 |
C |
CAT |
2bp_insertion | CDS_variant | 4 | B30,C47,C5,C59 |
Chr2:61879391 |
TCC |
T |
2bp_deletion | frameshift_variant | 4 | B30,C47,C5,C59 |
Chr2:61879391 |
TCC |
T |
2bp_deletion | CDS_variant | 4 | B30,C47,C5,C59 |
Chr2:61879399 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B10,B16,B37,B79 |
Chr2:61879417 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B72,C15,C36,C83 |
Chr2:61879433 |
C |
T |
EMS_canonical_SNV | stop_gained | 1 | B27 |
Chr2:61879433 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B27 |
Chr2:61879434 |
AG |
A |
1bp_deletion | frameshift_variant | 2 | B110,C36 |
Chr2:61879434 |
AG |
A |
1bp_deletion | CDS_variant | 2 | B110,C36 |
Chr2:61879438 |
C |
T |
EMS_canonical_SNV | CDS_variant | 5 | B111,B5,B72,C15,C83 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。