当前解析结果
SmilChr02G003975| 统一新 Gene ID | SmilChr02G003975 |
|---|---|
| 名称 | SmilChr02G003975 |
| 描述 | putative pentatricopeptide repeat-containing protein At5g47460 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62018383 - 62020429 / - |
| NCBI Gene ID | LOC131010896 |
|---|---|
| GeneID | 131010896 |
| locus_tag | - |
| NCBI Name | LOC131010896 |
| 原始查询 | SmilChr02G003975 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative pentatricopeptide repeat-containing protein At5g47460 |
| 产物 | putative pentatricopeptide repeat-containing protein At5g47460 |
| Arabidopsis | AT5G47460 (AT5G47460)Pentatricopeptide repeat (PPR) superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:834796] identity=48.5; qcov=1; evalue=2.62e-119; confidence=high |
| Rice | Os01g0101150 (P0672D08.16)- identity=33; qcov=1.1; evalue=1.5e-70; confidence=low |
| GO | GO:0003723 (RNA binding); GO:0005515 (protein binding); GO:0009451 (RNA modification) |
| KEGG | - |
| Pfam | PF01535 (PPR); PF13041 (PPR_2); PF13812 (PPR_3); PF20431 (E_motif) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010896 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057794582.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794582.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794582.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794582.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794582.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62018569 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr2:62018570 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B139 |
Chr2:62018610 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A2,A8,C8 |
Chr2:62018661 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62018675 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:62018756 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:62018946 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B100,B115 |
Chr2:62019002 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:62019079 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:62019105 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62019129 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C36 |
Chr2:62019185 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794582.1PF01535
PPR 24-49 aa
PF01535
PPR 55-80 aa
PF13041
PPR_2 83-129 aa
PF01535
PPR 87-115 aa
PF13041
PPR_2 185-232 aa
PF13812
PPR_3 185-232 aa
PF01535
PPR 187-213 aa
PF01535
PPR 263-284 aa
PF20431
E_motif 306-365 aa
PF01535
PPR 326-355 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 24 | 49 | 1.3e-41 | 138.6 | PPR repeat |
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 55 | 80 | 1.3e-41 | 138.6 | PPR repeat |
XP_057794582.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 83 | 129 | 2.3e-42 | 143.6 | PPR repeat family |
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 87 | 115 | 1.3e-41 | 138.6 | PPR repeat |
XP_057794582.1 |
Pfam | PF13041 |
PPR_2 | Repeat | 185 | 232 | 2.3e-42 | 143.6 | PPR repeat family |
XP_057794582.1 |
Pfam | PF13812 |
PPR_3 | Repeat | 185 | 232 | 1.2e-13 | 51.7 | Pentatricopeptide repeat domain |
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 187 | 213 | 1.3e-41 | 138.6 | PPR repeat |
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 263 | 284 | 1.3e-41 | 138.6 | PPR repeat |
XP_057794582.1 |
Pfam | PF20431 |
E_motif | Repeat | 306 | 365 | 1e-17 | 64.9 | E motif |
XP_057794582.1 |
Pfam | PF01535 |
PPR | Repeat | 326 | 355 | 1.3e-41 | 138.6 | PPR repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。