当前解析结果
SmilChr02G003976| 统一新 Gene ID | SmilChr02G003976 |
|---|---|
| 名称 | SmilChr02G003976 |
| 描述 | probable beta-D-xylosidase 7 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62023403 - 62027692 / + |
| NCBI Gene ID | LOC131010871 |
|---|---|
| GeneID | 131010871 |
| locus_tag | - |
| NCBI Name | LOC131010871 |
| 原始查询 | SmilChr02G003976 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | probable beta-D-xylosidase 7 |
| 产物 | probable beta-D-xylosidase 7 |
| Arabidopsis | AT1G78060 (AT1G78060)Glycosyl hydrolase family protein [Source:NCBI gene (formerly Entrezgene);Acc:844141] identity=63.8; qcov=0.947; evalue=0; confidence=high |
| Rice | Os02g0752200- identity=60.9; qcov=0.951; evalue=0; confidence=high |
| GO | GO:0009044 (xylan 1,4-beta-xylosidase activity); GO:0009505 (plant-type cell wall); GO:0031222 (arabinan catabolic process); GO:0045493 (xylan catabolic process); GO:0046556 (alpha-L-arabinofuranosidase activity) |
| KEGG | - |
| Pfam | PF00933 (Glyco_hydro_3); PF01915 (Glyco_hydro_3_C); PF14310 (Fn3-like) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010871 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Secreted | 分泌到胞外 | 1.00000 | XP_057794543.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794543.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794543.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794543.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794543.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62023618 |
C |
CA |
1bp_insertion | frameshift_variant | 68 | A1,A2,A24,A25,A5,B103,B106,B107,B109,B119,B122,B125,B126,B127,B131,B135,B140,B16,B19,B2,B21,B3,B34,B4,B44,B49,B51,B52,B57,B59,B61,B64,B71,B73,B88,B90,B92,B93,B97,B99,C10,C17,C18,C2,C20,C21,C27,C3,C33,C37,C38,C4,C42,C43,C46,C49,C50,C53,C58,C62,C65,C72,C83,D1,D3,D4,D6,D9 |
Chr2:62023637 |
G |
GA |
1bp_insertion | frameshift_variant | 88 | A1,A10,A13,A14,A15,A16,A21,A24,A5,A7,A9,B10,B102,B103,B104,B105,B109,B11,B113,B115,B117,B123,B124,B13,B133,B136,B137,B14,B17,B2,B20,B25,B28,B29,B30,B32,B34,B46,B5,B51,B55,B56,B58,B6,B62,B66,B72,B74,B75,B76,B77,B79,B80,B84,B85,B96,B98,C11,C13,C15,C24,C25,C28,C3,C30,C31,C37,C45,C47,C48,C5,C51,C52,C54,C56,C61,C69,C73,C74,C77,C78,C82,C84,C85,C86,C9,D2,D5 |
Chr2:62023682 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B8,B95,C14 |
Chr2:62023826 |
TC |
T |
1bp_deletion | frameshift_variant | 2 | B95,D3 |
Chr2:62023826 |
TC |
T |
1bp_deletion | CDS_variant | 2 | B95,D3 |
Chr2:62023848 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A20,B129,B59 |
Chr2:62023851 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B84 |
Chr2:62023869 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B95,C14 |
Chr2:62023935 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B125,B40,B52 |
Chr2:62023979 |
AG |
A |
1bp_deletion | frameshift_variant | 1 | B107 |
Chr2:62023979 |
AG |
A |
1bp_deletion | CDS_variant | 1 | B107 |
Chr2:62025280 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B35,B84 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794543.1PF00933
Glyco_hydro_3 114-382 aa
PF01915
Glyco_hydro_3_C 424-653 aa
PF14310
Fn3-like 719-785 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794543.1 |
Pfam | PF00933 |
Glyco_hydro_3 | Domain | 114 | 382 | 7.6e-33 | 115.0 | Glycosyl hydrolase family 3 N terminal domain |
XP_057794543.1 |
Pfam | PF01915 |
Glyco_hydro_3_C | Domain | 424 | 653 | 1.6e-53 | 182.4 | Glycosyl hydrolase family 3 C-terminal domain |
XP_057794543.1 |
Pfam | PF14310 |
Fn3-like | Family | 719 | 785 | 5.6e-09 | 36.7 | Fibronectin type III-like domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。