Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003980`

染色体: Chr02 坐标: 62060085-62064416 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003980`
名称	SmilChr02G003980
描述	uncharacterized SmilChr02G003980
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62060085 - 62064416 / `+`

ID 对照

NCBI Gene ID	`LOC131010892`
GeneID	`131010892`
locus_tag	`-`
NCBI Name	`LOC131010892`
原始查询	`SmilChr02G003980`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
产物	Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low
Arabidopsis	`AT5G64950` (AT5G64950) Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=25.6; qcov=0.914; evalue=1.32e-37; confidence=low
Rice	`Os06g0224500` - identity=27.9; qcov=0.849; evalue=1.22e-33; confidence=low
GO	GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization)
KEGG	smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage))
Pfam	PF02536 (mTERF)
InterPro	-
eggNOG	-
NR	GeneID:131010892

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Mitochondrion	线粒体	1.00000	`XP_057794576.1`
2	Nucleus	细胞核	0.00000	`XP_057794576.1`
3	Chromosome	染色体	0.00000	`XP_057794576.1`
4	Centromere	着丝粒	0.00000	`XP_057794576.1`
5	Chromatin	染色质	0.00000	`XP_057794576.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62060323`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B95,C14
`Chr2:62060362`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C36
`Chr2:62060489`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B137,B24,C27
`Chr2:62060507`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B24,C27,C36
`Chr2:62060512`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B24,C27
`Chr2:62060515`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B103,B117
`Chr2:62060557`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B120,B24,C27
`Chr2:62060574`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A11,B83,C29
`Chr2:62060575`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B103,B108,B69,C24
`Chr2:62060589`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B91
`Chr2:62060597`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	A11,B103,B108,B69,C24
`Chr2:62060634`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B109,B34

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794576.1

384 aa

192

384

mTERF

PF02536 mTERF 71-224 aa PF02536 mTERF 245-354 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794576.1`	Pfam	`PF02536`	mTERF	Family	71	224	9e-34	117.5	mTERF
`XP_057794576.1`	Pfam	`PF02536`	mTERF	Family	245	354	9e-34	117.5	mTERF

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XR_009096693.1
GTCAACGGCCGAAAGAAAGAAATTGAAAGATATCGCTTCTTCCCTCCTTTGCAACGGCGATGGCGATGATAAAGAAACCCTCAATCCAGAAACTCTGAGTCCTTGGATTTGGCAGGCAAGTCATTTCCATCTCCCAACACAATTGATTCTTCTCGTTTTATTACCGCATTTTCTCCATTATTATGATTTCAATTGCTCGCAATAATCTCTCCTGCTTGTTTTCAAACCCTAATTCATACCTCTGCAACCCCAATGTTCTC...

XR_009096692.1
GTCAACGGCCGAAAGAAAGAAATTGAAAGATATCGCTTCTTCCCTCCTTTGCAACGGCGATGGCGATGATAAAGAAACCCTCAATCCAGAAACTCTGAGTCCTTGGATTTGGCAGGCAAGTCATTTCCATCTCCCAACACAATTGATTCTTCTCGTTTTATTACCGCATTTTCTCCATTATTATGATTTCAATTGCTCGCAATAATCTCTCCTGCTTGTTTTCAAACCCTAATTCATACCTCTGCAACCCCAATGTTCTC...

CDS

1 records

下载 CDS FASTA

LOC131010892
ATGATTTCAATTGCTCGCAATAATCTCTCCTGCTTGTTTTCAAACCCTAATTCATACCTCTGCAACCCCAATGTTCTCTCATTCCACTTTTTCTCCGCTGCGAGAGCCAAAAGATTCATAATCCCTTCCCCTGAAATTTACGATGTGTTGGTCCATAACCACCAATTTTCTCCTGAATTGGCTGCACATGCTTCATCGCGCTTACCTAAATTCAGAAGTCCCGAAAGAGCTGATTCAATACTGTCGTTCCTCAAAGAAAA...

Protein

1 records

下载 Protein FASTA

XP_057794576.1
MISIARNNLSCLFSNPNSYLCNPNVLSFHFFSAARAKRFIIPSPEIYDVLVHNHQFSPELAAHASSRLPKFRSPERADSILSFLKENSFTTTQLEKLVIHNPRILGFTIEGFKSRLKVFQDLGLSSEEIAKIISSNQGILHSCMASKVIPSLSMLKALLGSNDEVARLLKKCAWFLTHDLEKTLMPNVEILKSCSIPIERILHFLYTNPRCFLVKPDIMRKSVDGAIKFEVPQTSTAFIYAVAALSHTSEGMWEVKLETL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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