当前解析结果
SmilChr02G003982| 统一新 Gene ID | SmilChr02G003982 |
|---|---|
| 名称 | SmilChr02G003982 |
| 描述 | uncharacterized SmilChr02G003982 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62068759 - 62071888 / + |
| NCBI Gene ID | LOC131010893 |
|---|---|
| GeneID | 131010893 |
| locus_tag | - |
| NCBI Name | LOC131010893 |
| 原始查询 | SmilChr02G003982 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| 产物 | Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619]; symbol=AT5G64950; hit=AT5G64950; species=arabidopsis; confidence=low |
| Arabidopsis | AT5G64950 (AT5G64950)Mitochondrial transcription termination factor family protein [Source:NCBI gene (formerly Entrezgene);Acc:836619] identity=25.3; qcov=0.971; evalue=3.24e-39; confidence=low |
| Rice | Os06g0224500- identity=27.4; qcov=0.888; evalue=7.2e-33; confidence=low |
| GO | GO:0003690 (double-stranded DNA binding); GO:0006355 (regulation of DNA-templated transcription); GO:0009507 (chloroplast); GO:0009658 (chloroplast organization) |
| KEGG | smil04016 (MAPK signaling pathway - plant - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF02536 (mTERF) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010893 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057794577.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057794577.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057794577.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057794577.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057794577.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62069022 |
CT |
C |
1bp_deletion | frameshift_variant | 1 | C44 |
Chr2:62069022 |
CT |
C |
1bp_deletion | CDS_variant | 1 | C44 |
Chr2:62069115 |
G |
GAC |
2bp_insertion | frameshift_variant | 19 | A13,A18,B126,B128,B42,B61,B63,B64,B69,B71,B87,B88,B91,C49,C51,C54,C60,C67,D3 |
Chr2:62069118 |
ATG |
A |
2bp_deletion | frameshift_variant | 14 | A13,A18,B126,B128,B42,B64,B69,B71,B87,C49,C51,C60,C67,D3 |
Chr2:62069188 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | B11,B128,B22,C41 |
Chr2:62069196 |
ATG |
A |
2bp_deletion | frameshift_variant | 1 | B81 |
Chr2:62069196 |
ATG |
A |
2bp_deletion | CDS_variant | 1 | B81 |
Chr2:62069341 |
CA |
C |
1bp_deletion | frameshift_variant | 24 | A1,B119,B123,B133,B137,B29,B30,B51,B55,B6,B66,B72,B73,B77,B80,C23,C3,C30,C37,C47,C52,C67,C82,C86 |
Chr2:62069392 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B131,B18,B27,B64 |
Chr2:62069446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D4,D9 |
Chr2:62069511 |
T |
TG |
1bp_insertion | frameshift_variant | 3 | C26,C56,C67 |
Chr2:62069511 |
T |
TG |
1bp_insertion | CDS_variant | 3 | C26,C56,C67 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794577.1PF02536
mTERF 70-227 aa
PF02536
mTERF 239-354 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794577.1 |
Pfam | PF02536 |
mTERF | Family | 70 | 227 | 2.9e-35 | 122.4 | mTERF |
XP_057794577.1 |
Pfam | PF02536 |
mTERF | Family | 239 | 354 | 2.9e-35 | 122.4 | mTERF |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。