Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G003996`

染色体: Chr02 坐标: 62286642-62291386 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G003996`
名称	SmilChr02G003996
描述	sulfate transporter 1.3
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62286642 - 62291386 / `+`

ID 对照

NCBI Gene ID	`LOC131010930`
GeneID	`131010930`
locus_tag	`-`
NCBI Name	`LOC131010930`
原始查询	`SmilChr02G003996`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	sulfate transporter 1.3
产物	sulfate transporter 1.3
Arabidopsis	`AT1G22150` (SULTR1;3) sulfate transporter 1;3 [Source:NCBI gene (formerly Entrezgene);Acc:838820] identity=74.9; qcov=0.995; evalue=0; confidence=high
Rice	`Os03g0195800` (OsSultr1) - identity=71.2; qcov=0.963; evalue=0; confidence=high
GO	GO:0008271 (secondary active sulfate transmembrane transporter activity); GO:0008272 (GO:0008272); GO:0016020 (membrane); GO:0055085 (transmembrane transport)
KEGG	-
Pfam	PF00916 (Sulfate_transp); PF01740 (STAS)
InterPro	-
eggNOG	-
NR	GeneID:131010930

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794620.1`
2	Nucleus	细胞核	0.00000	`XP_057794620.1`
3	Chromosome	染色体	0.00000	`XP_057794620.1`
4	Centromere	着丝粒	0.00000	`XP_057794620.1`
5	Chromatin	染色质	0.00000	`XP_057794620.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62288108`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62288119`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B78
`Chr2:62288249`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:62288340`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62288364`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B3,B97,D1
`Chr2:62289019`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	B107,B140
`Chr2:62289187`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B139
`Chr2:62289355`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:62289478`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C62
`Chr2:62289512`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	A11,B50,B63,C55
`Chr2:62289522`	`GAT`	`G`	2bp_deletion	frameshift_variant	7	A9,B104,B119,B123,B134,B87,C3
`Chr2:62289554`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794620.1

649 aa

324

649

Sulfate_transp

STAS

PF00916 Sulfate_transp 86-467 aa PF01740 STAS 519-637 aa

XP_057794621.1

649 aa

324

649

Sulfate_transp

STAS

PF00916 Sulfate_transp 86-467 aa PF01740 STAS 519-637 aa

XP_057794622.1

649 aa

324

649

Sulfate_transp

STAS

PF00916 Sulfate_transp 86-467 aa PF01740 STAS 519-637 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794620.1`	Pfam	`PF00916`	Sulfate_transp	Family	86	467	3.6e-139	464.5	Sulfate permease family
`XP_057794620.1`	Pfam	`PF01740`	STAS	Domain	519	637	5.8e-28	97.5	STAS domain
`XP_057794621.1`	Pfam	`PF00916`	Sulfate_transp	Family	86	467	3.6e-139	464.5	Sulfate permease family
`XP_057794621.1`	Pfam	`PF01740`	STAS	Domain	519	637	5.8e-28	97.5	STAS domain
`XP_057794622.1`	Pfam	`PF00916`	Sulfate_transp	Family	86	467	3.6e-139	464.5	Sulfate permease family
`XP_057794622.1`	Pfam	`PF01740`	STAS	Domain	519	637	5.8e-28	97.5	STAS domain

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

3 records

下载 cDNA FASTA

XM_057938637.1
TAATTAAATACGTAGATTTTCTCAAATTCAGGAATTCAATACAATATTCCGTCCTCATACAAATTAATACAGACACGAAACGAAGAACAGGAGCATTTCAAGTCATAATTCTATGCCATTTTCCATCTACATGCATGCAAATTGTAATTAATTGAAAACATTATTATTTGATTCCATAATATGTTAGATGTCCACAACAGGCATTCCTTCAACCTCGGATGGCTCCGATTATACCATAACAAATTGCAGTTGAACAATTT...

XM_057938638.1
TAATTAAATACGTAGATTTTCTCAAATTCAGGAATTCAATACAATATTCCGTCCTCATACAAATTAATACAGACACGAAACGAAGAACAGGAGCATTTCAAGTCATAATTCTATGCCATTTTCCATCTACATGCATGCAAATTGTAATTAATTGAAAACATTATTATTTGATTCCATAATATGTTAGATGTCCACAACAGGCATTCCTTCAACCTCGGATGGCTCCGATTATACCATAACAAATTGCAGTTGAACAATTT...

CDS

3 records

下载 CDS FASTA

LOC131010930
ATGGGAGATCCTAGGGAAGAAGAAATGGAGCCTACAGAGTCGACATCTTCGCGCCATCCGGTGCTGCCATACAAAGTTGGCATTCCTCCAAAGCAGAAGCTATGGAAGGAGTTCTCTGCAACTCTGAAGGAGACATTCTTCGCAGATGATCCTCTCCGCTCATTCAAGGATCAATCAAGAACGCGCAAGTTTCTCCTAGGAGTCGAGGCCGTCTTCCCCATCCTCTCGTGGGGCAGAAGCTACAATCTCACTAAATTCAA...

Protein

3 records

下载 Protein FASTA

XP_057794620.1
MGDPREEEMEPTESTSSRHPVLPYKVGIPPKQKLWKEFSATLKETFFADDPLRSFKDQSRTRKFLLGVEAVFPILSWGRSYNLTKFKGDLVAGLTIASLCIPQDIGYAKLANLAPQYGLYSSLVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQDEVDPVANPDVYRRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKSTDIISVVHSILSSAPHGWNVPTILIGASFL...

XP_057794621.1
MGDPREEEMEPTESTSSRHPVLPYKVGIPPKQKLWKEFSATLKETFFADDPLRSFKDQSRTRKFLLGVEAVFPILSWGRSYNLTKFKGDLVAGLTIASLCIPQDIGYAKLANLAPQYGLYSSLVPPLIYALMGSSRDIAIGPVAVVSLLLGTLLQDEVDPVANPDVYRRLAFTATFFAGITQATLGILRLGFLIDFLSHAAIVGFMGGAAITIALQQLKGFLGIKKFTKSTDIISVVHSILSSAPHGWNVPTILIGASFL...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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