当前解析结果
SmilChr02G004000| 统一新 Gene ID | SmilChr02G004000 |
|---|---|
| 名称 | SmilChr02G004000 |
| 描述 | uncharacterized SmilChr02G004000 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62339553 - 62344032 / - |
| NCBI Gene ID | LOC131009851 |
|---|---|
| GeneID | 131009851 |
| locus_tag | - |
| NCBI Name | LOC131009851 |
| 原始查询 | SmilChr02G004000 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | hit=Os12g0142900; species=rice; confidence=weak |
| 产物 | hit=Os12g0142900; species=rice; confidence=weak |
| Arabidopsis | ATMG00860- identity=33.3; qcov=0.089; evalue=1.39e-16; confidence=weak |
| Rice | Os12g0142900- identity=31; qcov=0.282; evalue=9.99e-63; confidence=weak |
| GO | GO:0003676 (nucleic acid binding); GO:0004523 (RNA-DNA hybrid ribonuclease activity); GO:0015074 (DNA integration) |
| KEGG | - |
| Pfam | PF00075 (RNase_H); PF00078 (RVT_1); PF00665 (rve); PF13456 (RVT_3); PF17917 (RT_RNaseH); PF17919 (RT_RNaseH_2); PF31073 (DUF8803) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009851 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057793239.1 |
| 2 | Cytosol | 细胞质基质 | 0.80000 | XP_057793239.1 |
| 3 | Nucleus | 细胞核 | 0.00000 | XP_057793239.1 |
| 4 | Chromosome | 染色体 | 0.00000 | XP_057793239.1 |
| 5 | Centromere | 着丝粒 | 0.00000 | XP_057793239.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62339622 |
C |
T |
EMS_canonical_SNV | CDS_variant | 4 | A24,B54,C22,C34 |
Chr2:62339712 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B52,C66 |
Chr2:62339730 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | C17,C38 |
Chr2:62339759 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B129,B52 |
Chr2:62339770 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B1,B52,C14 |
Chr2:62339772 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B1,B52,C14 |
Chr2:62339790 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B1,B52,C14,C25 |
Chr2:62339801 |
G |
A |
EMS_canonical_SNV | stop_gained | 2 | B1,B52 |
Chr2:62339801 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B1,B52 |
Chr2:62339802 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B1,B23,B52,C14,C25 |
Chr2:62339859 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C14,C25 |
Chr2:62339866 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B23,C14,C25 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793239.1PF00078
RVT_1 479-639 aa
PF17919
RT_RNaseH_2 702-799 aa
PF17917
RT_RNaseH 728-831 aa
PF00075
RNase_H 881-1002 aa
PF13456
RVT_3 883-1002 aa
PF00665
rve 1137-1218 aa
PF31073
DUF8803 1345-1409 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793239.1 |
Pfam | PF00078 |
RVT_1 | Domain | 479 | 639 | 8.5e-35 | 121.2 | Reverse transcriptase (RNA-dependent DNA polymerase) |
XP_057793239.1 |
Pfam | PF17919 |
RT_RNaseH_2 | Domain | 702 | 799 | 3.6e-22 | 79.0 | RNase H-like domain found in reverse transcriptase |
XP_057793239.1 |
Pfam | PF17917 |
RT_RNaseH | Domain | 728 | 831 | 2.9e-22 | 79.5 | RNase H-like domain found in reverse transcriptase |
XP_057793239.1 |
Pfam | PF00075 |
RNase_H | Domain | 881 | 1002 | 2.7e-08 | 34.8 | RNase H |
XP_057793239.1 |
Pfam | PF13456 |
RVT_3 | Domain | 883 | 1002 | 2.4e-20 | 73.4 | Reverse transcriptase-like |
XP_057793239.1 |
Pfam | PF00665 |
rve | Domain | 1137 | 1218 | 3.2e-10 | 40.9 | Integrase core domain |
XP_057793239.1 |
Pfam | PF31073 |
DUF8803 | Domain | 1345 | 1409 | 6.6e-13 | 49.0 | Domain of unknown function (DUF8803) |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。