当前解析结果
SmilChr02G004012| 统一新 Gene ID | SmilChr02G004012 |
|---|---|
| 名称 | SmilChr02G004012 |
| 描述 | uncharacterized oxidoreductase At4g09670-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62438104 - 62438445 / - |
| NCBI Gene ID | LOC131010946 |
|---|---|
| GeneID | 131010946 |
| locus_tag | - |
| NCBI Name | LOC131010946 |
| 原始查询 | SmilChr02G004012 |
| 来源 | GFF basic annotation; Arabidopsis/Rice homolog |
|---|---|
| 描述 | Ord; symbol=Ord; hit=Os10g0403700; species=rice; confidence=medium |
| 产物 | Ord; symbol=Ord; hit=Os10g0403700; species=rice; confidence=medium |
| Arabidopsis | AT4G09670 (AT4G09670)Oxidoreductase family protein [Source:NCBI gene (formerly Entrezgene);Acc:826553] identity=43.2; qcov=0.982; evalue=1.06e-26; confidence=medium |
| Rice | Os10g0403700 (Ord)- identity=50.5; qcov=0.982; evalue=1.38e-33; confidence=medium |
| GO | - |
| KEGG | - |
| Pfam | - |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010946 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cytoplasm | 细胞质 | 0.80000 | XP_057794636.1 |
| 2 | Cytosol | 细胞质基质 | 0.40000 | XP_057794636.1 |
| 3 | Nucleus | 细胞核 | 0.20000 | XP_057794636.1 |
| 4 | Peroxisome | 过氧化物酶体 | 0.20000 | XP_057794636.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794636.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62438128 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:62438137 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B37 |
Chr2:62438146 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A19,B45,C77 |
Chr2:62438158 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A9,B37 |
Chr2:62438187 |
TA |
T |
1bp_deletion | frameshift_variant | 51 | A10,A14,A16,A20,B1,B119,B122,B123,B131,B133,B136,B137,B29,B30,B34,B51,B53,B55,B56,B57,B58,B6,B66,B7,B72,B79,B82,B87,B9,B95,B96,C14,C23,C3,C30,C33,C36,C37,C4,C40,C43,C51,C52,C54,C67,C8,C82,C83,C86,C9,D11 |
Chr2:62438197 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A9,B37,D7 |
Chr2:62438200 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B70 |
Chr2:62438203 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62438243 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B65,B86 |
Chr2:62438268 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62438273 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | A9,B37,D7 |
Chr2:62438273 |
TG |
T |
1bp_deletion | CDS_variant | 3 | A9,B37,D7 |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。