当前解析结果
SmilChr02G004021| 统一新 Gene ID | SmilChr02G004021 |
|---|---|
| 名称 | SmilChr02G004021 |
| 描述 | GPCR-type G protein 1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62505841 - 62511511 / + |
| NCBI Gene ID | LOC131010952 |
|---|---|
| GeneID | 131010952 |
| locus_tag | - |
| NCBI Name | LOC131010952 |
| 原始查询 | SmilChr02G004021 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | GPCR-type G protein 1 |
| 产物 | GPCR-type G protein 1 |
| Arabidopsis | AT1G64990 (GTG1)GPCR-type G protein 1 [Source:NCBI gene (formerly Entrezgene);Acc:842807] identity=83.8; qcov=1; evalue=0; confidence=high |
| Rice | Os04g0600800 (COLD1)- identity=82.6; qcov=0.97; evalue=0; confidence=high |
| GO | GO:0009737 (response to abscisic acid); GO:0010427 (abscisic acid binding); GO:0016020 (membrane) |
| KEGG | - |
| Pfam | PF12430 (ABA_GPCR); PF12537 (GPHR_N) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010952 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Endoplasmic reticulum | 内质网 | 1.00000 | XP_057794642.1 |
| 2 | Endoplasmic reticulum membrane | 内质网膜 | 1.00000 | XP_057794642.1 |
| 3 | Golgi apparatus | 高尔基体 | 0.60000 | XP_057794642.1 |
| 4 | Nucleus | 细胞核 | 0.00000 | XP_057794642.1 |
| 5 | Chromosome | 染色体 | 0.00000 | XP_057794642.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62506220 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62506334 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:62507520 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A7 |
Chr2:62509223 |
C |
T |
EMS_canonical_SNV | stop_gained | 9 | A23,B130,B137,B15,B44,B74,B86,B92,C76 |
Chr2:62509410 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B66,C24,C73 |
Chr2:62509947 |
GT |
G |
1bp_deletion | frameshift_variant | 4 | A15,B9,C38,D11 |
Chr2:62509947 |
GT |
G |
1bp_deletion | CDS_variant | 4 | A15,B9,C38,D11 |
Chr2:62509984 |
C |
T |
EMS_canonical_SNV | stop_gained | 2 | B26,C5 |
Chr2:62509984 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B26,C5 |
Chr2:62510385 |
A |
AT |
1bp_insertion | frameshift_variant | 21 | A18,B120,B125,B134,B24,B3,B36,B91,B98,C16,C27,C3,C31,C37,C44,C68,C72,C74,C8,D3,D7 |
Chr2:62510785 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B139,B63,B78,B83 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057794642.1PF12537
GPHR_N 143-210 aa
PF12430
ABA_GPCR 286-456 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794642.1 |
Pfam | PF12537 |
GPHR_N | Family | 143 | 210 | 1.5e-23 | 83.4 | The Golgi pH Regulator (GPHR) Family N-terminal |
XP_057794642.1 |
Pfam | PF12430 |
ABA_GPCR | Family | 286 | 456 | 5.6e-43 | 147.5 | Abscisic acid G-protein coupled receptor |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。