Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004022`

染色体: Chr02 坐标: 62513814-62517500 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004022`
名称	SmilChr02G004022
描述	uncharacterized SmilChr02G004022
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62513814 - 62517500 / `+`

ID 对照

NCBI Gene ID	`LOC131010953`
GeneID	`131010953`
locus_tag	`-`
NCBI Name	`LOC131010953`
原始查询	`SmilChr02G004022`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	P0566A10.33-2; symbol=P0566A10.33-2; hit=Os06g0581300; species=rice; confidence=high
产物	P0566A10.33-2; symbol=P0566A10.33-2; hit=Os06g0581300; species=rice; confidence=high
Arabidopsis	`AT1G22750` (AT1G22750) uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:838881] identity=50; qcov=1.01; evalue=4.18e-81; confidence=high
Rice	`Os06g0581300` (P0566A10.33-2) - identity=51; qcov=0.979; evalue=1.19e-86; confidence=high
GO	-
KEGG	-
Pfam	PF07343 (DUF1475)
InterPro	-
eggNOG	-
NR	GeneID:131010953

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057794643.1`
2	Endoplasmic reticulum membrane	内质网膜	0.80000	`XP_057794643.1`
3	Golgi apparatus	高尔基体	0.20000	`XP_057794643.1`
4	Nucleus	细胞核	0.00000	`XP_057794643.1`
5	Chromosome	染色体	0.00000	`XP_057794643.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62515221`	`C`	`CTG`	2bp_insertion	frameshift_variant	2	B107,B140
`Chr2:62515221`	`C`	`CTG`	2bp_insertion	CDS_variant	2	B107,B140
`Chr2:62516450`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:62516833`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A19,B45,C77
`Chr2:62516862`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B8,B98

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794643.1

265 aa

132

265

DUF1475

PF07343 DUF1475 5-117 aa PF07343 DUF1475 123-239 aa

XP_057794644.1

258 aa

129

258

DUF1475

PF07343 DUF1475 5-117 aa PF07343 DUF1475 123-238 aa

XP_057794645.1

242 aa

121

242

DUF1475

PF07343 DUF1475 5-117 aa PF07343 DUF1475 123-237 aa

XP_057794646.1

242 aa

121

242

DUF1475

PF07343 DUF1475 5-117 aa PF07343 DUF1475 123-237 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794643.1`	Pfam	`PF07343`	DUF1475	Family	5	117	4.2e-85	286.0	Protein of unknown function (DUF1475)
`XP_057794643.1`	Pfam	`PF07343`	DUF1475	Family	123	239	4.2e-85	286.0	Protein of unknown function (DUF1475)
`XP_057794644.1`	Pfam	`PF07343`	DUF1475	Family	5	117	6.2e-85	285.4	Protein of unknown function (DUF1475)
`XP_057794644.1`	Pfam	`PF07343`	DUF1475	Family	123	238	6.2e-85	285.4	Protein of unknown function (DUF1475)
`XP_057794645.1`	Pfam	`PF07343`	DUF1475	Family	5	117	6.8e-85	285.3	Protein of unknown function (DUF1475)
`XP_057794645.1`	Pfam	`PF07343`	DUF1475	Family	123	237	6.8e-85	285.3	Protein of unknown function (DUF1475)
`XP_057794646.1`	Pfam	`PF07343`	DUF1475	Family	5	117	8.1e-85	285.0	Protein of unknown function (DUF1475)
`XP_057794646.1`	Pfam	`PF07343`	DUF1475	Family	123	237	8.1e-85	285.0	Protein of unknown function (DUF1475)

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938661.1
AAATTTTTAAATTGGCCGAAGTATAGAAATGAGAATATGCGGCGAGAGTGGTCCAGTGTGAAGACAAGACGTGGATTCATGCCATTCCCATATCTTTTTCTTCATTTCTCCAACTTACAAACCAAATTCAAAGCTCCGAAAGCTTTCATCAATGGCGGTAGCTTCGCTTGCAATCGGGCTGAGAACGGCGTTCGTGGTGCTCGGATGTCTAGCCACCGCCACTGTTATCTACACTGTCGTCACCGATGGCCTCCCTTTCC...

XM_057938663.1
AATGAGAATATGCGGCGAGAGTGGTCCAGTGTGAAGACAAGACGTGGATTCATGCCATTCCCATATCTTTTTCTTCATTTCTCCAACTTACAAACCAAATTCAAAGCTCCGAAAGCTTTCATCAATGGCGGTAGCTTCGCTTGCAATCGGGCTGAGAACGGCGTTCGTGGTGCTCGGATGTCTAGCCACCGCCACTGTTATCTACACTGTCGTCACCGATGGCCTCCCTTTCCGCAAAGAACTCCTCACCCCGTGGATGG...

CDS

4 records

下载 CDS FASTA

LOC131010953
ATGGCGGTAGCTTCGCTTGCAATCGGGCTGAGAACGGCGTTCGTGGTGCTCGGATGTCTAGCCACCGCCACTGTTATCTACACTGTCGTCACCGATGGCCTCCCTTTCCGCAAAGAACTCCTCACCCCGTGGATGGCAGCAACCTTGGTTGATTTCTATATCAACATCCTAGTCATAGGGGTGTGGATAATCTACAAGGAATCTAACTGGATTTTGTCTGTAATCTGGATAGTTTTGCTTATATGTTTTGGAAGCATCAC...

Protein

4 records

下载 Protein FASTA

XP_057794643.1
MAVASLAIGLRTAFVVLGCLATATVIYTVVTDGLPFRKELLTPWMAATLVDFYINILVIGVWIIYKESNWILSVIWIVLLICFGSITTCAYIVMQFLKLTPQESLLDPIYFVLLTNKKREEVESKKSILSVVSARVVFCVLGCLMLSTLVYTISTDGSPFRQGVLTPWLSATLVDFYVNVIAISVWVAYKESRWTRAALWIILLICLGSITTCAYVALQLFRISPQDPVYLVLFSSSSRSFLDDGRAVNGYEGTPQTETY...

XP_057794644.1
MAVASLAIGLRTAFVVLGCLATATVIYTVVTDGLPFRKELLTPWMAATLVDFYINILVIGVWIIYKESNWILSVIWIVLLICFGSITTCAYIVMQFLKLTPQESLLDPIYFVLLTNKKREEVESKKSILSVVSARVVFCVLGCLMLSTLVYTISTDGSPFRQGVLTPWLSATLVDFYVNVIAISVWVAYKESRWTRAALWIILLICLGSITTCAYVALQLFRISPQDPVYLVLFSSSSRAVNGYEGTPQTETYTKLVR

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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