当前解析结果
SmilChr02G004025| 统一新 Gene ID | SmilChr02G004025 |
|---|---|
| 名称 | SmilChr02G004025 |
| 描述 | uncharacterized SmilChr02G004025 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62535423 - 62536604 / + |
| NCBI Gene ID | LOC131009858 |
|---|---|
| GeneID | 131009858 |
| locus_tag | - |
| NCBI Name | LOC131009858 |
| 原始查询 | SmilChr02G004025 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506]; symbol=AT1G71760; hit=AT1G71760; species=arabidopsis; confidence=low |
| 产物 | uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506]; symbol=AT1G71760; hit=AT1G71760; species=arabidopsis; confidence=low |
| Arabidopsis | AT1G71760 (AT1G71760)uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506] identity=34.5; qcov=1.14; evalue=2.3e-44; confidence=low |
| Rice | Os01g0716300- identity=40.8; qcov=0.636; evalue=1.65e-27; confidence=medium |
| GO | GO:0003682 (chromatin binding); GO:0005634 (nucleus); GO:0007095 (mitotic G2 DNA damage checkpoint signaling) |
| KEGG | - |
| Pfam | PF15749 (MRNIP) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009858 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057793246.1 |
| 2 | Nucleoplasm | 核质 | 0.40000 | XP_057793246.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793246.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793246.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793246.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62535822 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B6,C86 |
Chr2:62535884 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B133,B16,C39 |
Chr2:62535976 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B18,B91 |
Chr2:62536016 |
G |
A |
EMS_canonical_SNV | stop_gained | 1 | C65 |
Chr2:62536016 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C65 |
Chr2:62536303 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | A18,B40,C85 |
Chr2:62536355 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62536359 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B18,C70 |
Chr2:62536381 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B18,C70 |
Chr2:62536402 |
G |
GA |
1bp_insertion | frameshift_variant | 47 | A22,A9,B1,B10,B100,B101,B106,B107,B112,B114,B125,B13,B131,B137,B17,B19,B23,B37,B56,B58,B59,B65,B8,B90,B92,B96,C1,C10,C21,C34,C35,C4,C40,C41,C48,C49,C56,C57,C7,C70,C76,C82,D10,D11,D4,D7,D9 |
Chr2:62536413 |
CAA |
C |
2bp_deletion | frameshift_variant | 2 | C36,C77 |
Chr2:62536413 |
CAA |
C |
2bp_deletion | CDS_variant | 2 | C36,C77 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。
XP_057793246.1PF15749
MRNIP 8-103 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793246.1 |
Pfam | PF15749 |
MRNIP | Family | 8 | 103 | 2.3e-20 | 74.1 | MRN-interacting protein |
每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。