Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID,以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因,再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。
示例

当前解析结果

SmilChr02G004025

染色体: Chr02 坐标: 62535423-62536604 链方向: + 类型: protein_coding

基本信息

统一新 Gene IDSmilChr02G004025
名称SmilChr02G004025
描述uncharacterized SmilChr02G004025
染色体 / SeqIDChr02 / NC_080388.1
坐标与链方向62535423 - 62536604 / +

ID 对照

NCBI Gene IDLOC131009858
GeneID131009858
locus_tag-
NCBI NameLOC131009858
原始查询SmilChr02G004025

查看完整 ID 对照表

功能注释

来源GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506]; symbol=AT1G71760; hit=AT1G71760; species=arabidopsis; confidence=low
产物uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506]; symbol=AT1G71760; hit=AT1G71760; species=arabidopsis; confidence=low
ArabidopsisAT1G71760 (AT1G71760)
uncharacterized protein [Source:NCBI gene (formerly Entrezgene);Acc:843506]
identity=34.5; qcov=1.14; evalue=2.3e-44; confidence=low
RiceOs01g0716300
-
identity=40.8; qcov=0.636; evalue=1.65e-27; confidence=medium
GOGO:0003682 (chromatin binding); GO:0005634 (nucleus); GO:0007095 (mitotic G2 DNA damage checkpoint signaling)
KEGG-
PfamPF15749 (MRNIP)
InterPro-
eggNOG-
NRGeneID:131009858

打开注释模块

亚细胞定位 Top 5

Rank定位位置中文ScoreProtein ID
1 Nucleus 细胞核 1.00000 XP_057793246.1
2 Nucleoplasm 核质 0.40000 XP_057793246.1
3 Chromosome 染色体 0.00000 XP_057793246.1
4 Centromere 着丝粒 0.00000 XP_057793246.1
5 Chromatin 染色质 0.00000 XP_057793246.1

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变;完整结果可进入 EMS 突变库继续筛选或下载。

位置 REF ALT 类型 影响 携带材料数 材料
Chr2:62535822 G A EMS_canonical_SNV CDS_variant 2 B6,C86
Chr2:62535884 C T EMS_canonical_SNV CDS_variant 3 B133,B16,C39
Chr2:62535976 C T EMS_canonical_SNV CDS_variant 3 A18,B18,B91
Chr2:62536016 G A EMS_canonical_SNV stop_gained 1 C65
Chr2:62536016 G A EMS_canonical_SNV CDS_variant 1 C65
Chr2:62536303 C T EMS_canonical_SNV CDS_variant 3 A18,B40,C85
Chr2:62536355 C T EMS_canonical_SNV CDS_variant 1 D11
Chr2:62536359 G A EMS_canonical_SNV CDS_variant 2 B18,C70
Chr2:62536381 C T EMS_canonical_SNV CDS_variant 2 B18,C70
Chr2:62536402 G GA 1bp_insertion frameshift_variant 47 A22,A9,B1,B10,B100,B101,B106,B107,B112,B114,B125,B13,B131,B137,B17,B19,B23,B37,B56,B58,B59,B65,B8,B90,B92,B96,C1,C10,C21,C34,C35,C4,C40,C41,C48,C49,C56,C57,C7,C70,C76,C82,D10,D11,D4,D7,D9
Chr2:62536413 CAA C 2bp_deletion frameshift_variant 2 C36,C77
Chr2:62536413 CAA C 2bp_deletion CDS_variant 2 C36,C77

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan;位置为对应蛋白序列上的氨基酸坐标。

XP_057793246.1
231 aa
N
1
116
231
MRNIP
C
PF15749 MRNIP 8-103 aa
Protein ID 来源 结构域编号 结构域名称 类型 起始 aa 终止 aa E-value Score 说明
XP_057793246.1 Pfam PF15749 MRNIP Family 8 103 2.3e-20 74.1 MRN-interacting protein

cDNA / CDS / Protein 序列

下载基因组 DNA(仅基因区域)

每个公开基因均提供参考注释对应的转录本序列;蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA
XM_057937263.1
AAATTACAGATTTCCTAACGGGCCGAATTTAGGCCCATTGATTTCGGGTTGAGGCCCAAAAGGAAACAAAAAGCACCACGCTCTATAAATTCAGTTCAACAATTGATTTCCCGCCAAATTGCGCACATCCCTCTCCTTTTCACACACAGAGACAATCGCCGGAAGCAAAAATGCCGATCTCTTTCATCGCCGTTCAGTGCTTCGAGTGCTCCACCATGCAGGTGAAGCAGCAGAAGAAGAGCAGCAACAAATGGAGCTGC...

CDS

1 records

下载 CDS FASTA
LOC131009858
ATGCCGATCTCTTTCATCGCCGTTCAGTGCTTCGAGTGCTCCACCATGCAGGTGAAGCAGCAGAAGAAGAGCAGCAACAAATGGAGCTGCGTGGTGTGCAATCAGAAACAATCCGTGCGGAAGGTGTTCGCCCAATCATTCATGGCCAAGGACGTCCGGAAATTCGTCCAGAATTTCAACATGTCTCGCCAATTATCCGACCAGCAGCACTCGCTCTCCAACGACGAGTCTCATATTATCGTGGATGCTCCAGAAAACAA...

Protein

1 records

下载 Protein FASTA
XP_057793246.1
MPISFIAVQCFECSTMQVKQQKKSSNKWSCVVCNQKQSVRKVFAQSFMAKDVRKFVQNFNMSRQLSDQQHSLSNDESHIIVDAPENKDQKRKRNDWTEYIDNDGDQEEYSAKFEQGMNSAQEDDGIEPMVVTEMPKATFSKPKVSNYSCRGGKLLKPSFPNRRNSFMTQIREKPAHRNIAAGKDTVSKWSSFITAEDGDDDCRNSKREDDHLLELWMNDERVEEDIHPDFL

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补,使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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