Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004032`

染色体: Chr02 坐标: 62605331-62622002 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004032`
名称	SmilChr02G004032
描述	type IV inositol polyphosphate 5-phosphatase 3-like
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62605331 - 62622002 / `+`

ID 对照

NCBI Gene ID	`LOC131010964`
GeneID	`131010964`
locus_tag	`-`
NCBI Name	`LOC131010964`
原始查询	`SmilChr02G004032`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	type IV inositol polyphosphate 5-phosphatase 3-like
产物	type IV inositol polyphosphate 5-phosphatase 3-like
Arabidopsis	`AT1G71710` (AT1G71710) DNAse I-like superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:843501] identity=55.5; qcov=1.02; evalue=0; confidence=high
Rice	`Os01g0716800` - identity=52.1; qcov=0.995; evalue=0; confidence=high
GO	GO:0004439 (phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity); GO:0004445 (inositol-polyphosphate 5-phosphatase activity); GO:0034485 (phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity); GO:0046856 (phosphatidylinositol dephosphorylation)
KEGG	-
Pfam	PF22669 (Exo_endo_phos2)
InterPro	-
eggNOG	-
NR	GeneID:131010964

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cytoplasm	细胞质	0.80000	`XP_057794662.1`
2	Cell membrane	细胞膜	0.40000	`XP_057794657.1`
3	Cytosol	细胞质基质	0.20000	`XP_057794662.1`
4	Nucleus	细胞核	0.00000	`XP_057794657.1`
5	Chromosome	染色体	0.00000	`XP_057794657.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62616222`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	A5,B12,B4,C57
`Chr2:62618700`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B15,B48,B89
`Chr2:62621123`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A2
`Chr2:62621194`	`CA`	`C`	1bp_deletion	frameshift_variant	176	A1,A10,A11,A13,A15,A19,A20,A23,A25,A4,A6,A9,B1,B10,B101,B103,B107,B109,B11,B110,B111,B112,B114,B115,B117,B118,B120,B121,B124,B125,B126,B127,B128,B129,B13,B130,B131,B132,B134,B135,B137,B139,B14,B140,B15,B16,B17,B18,B19,B2,B20,B21,B22,B25,B26,B27,B28,B29,B3,B30,B32,B34,B35,B36,B37,B38,B39,B42,B43,B44,B45,B49,B5,B52,B54,B58,B60,B61,B62,B64,B65,B66,B67,B69,B7,B70,B71,B73,B74,B75,B76,B8,B81,B86,B88,B89,B9,B90,B92,B93,B94,B97,B99,C1,C10,C12,C13,C16,C18,C19,C2,C20,C21,C22,C24,C25,C26,C27,C28,C29,C3,C31,C32,C34,C35,C36,C38,C39,C4,C40,C42,C43,C44,C45,C47,C48,C5,C51,C53,C55,C56,C57,C58,C59,C6,C60,C61,C62,C64,C65,C66,C68,C7,C70,C71,C73,C75,C76,C77,C78,C8,C80,C82,C84,C85,C86,C87,D1,D10,D11,D2,D4,D5,D6,D7,D9

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794657.1

669 aa

334

669

Exo_endo_phos2

PF22669 Exo_endo_phos2 121-193 aa PF22669 Exo_endo_phos2 381-615 aa

XP_057794658.1

669 aa

334

669

Exo_endo_phos2

PF22669 Exo_endo_phos2 121-193 aa PF22669 Exo_endo_phos2 381-615 aa

XP_057794661.1

669 aa

334

669

Exo_endo_phos2

PF22669 Exo_endo_phos2 121-193 aa PF22669 Exo_endo_phos2 381-615 aa

XP_057794662.1

654 aa

327

654

Exo_endo_phos2

PF22669 Exo_endo_phos2 106-178 aa PF22669 Exo_endo_phos2 366-600 aa

XP_057794663.1

654 aa

327

654

Exo_endo_phos2

PF22669 Exo_endo_phos2 106-178 aa PF22669 Exo_endo_phos2 366-600 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794657.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	121	193	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794657.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	381	615	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794658.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	121	193	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794658.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	381	615	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794661.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	121	193	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794661.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	381	615	1.6e-74	251.8	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794662.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	106	178	1.5e-74	251.9	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794662.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	366	600	1.5e-74	251.9	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794663.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	106	178	1.5e-74	251.9	Endonuclease/Exonuclease/phosphatase family 2
`XP_057794663.1`	Pfam	`PF22669`	Exo_endo_phos2	Domain	366	600	1.5e-74	251.9	Endonuclease/Exonuclease/phosphatase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

5 records

下载 cDNA FASTA

XM_057938680.1
TCTCATTTCCCACATCCACTATACACCAAAAAACAAAAAGCTCTTTATTTCTTCAACTTTTTTTCTGAGCCGACACAGGAAAAATCTAGAAGCTCACTAGCTCAGTTCCAGCTAATCTTCAGAATCTTCATTGTTTTGATTATCTCGTGATGAAGAAGATCAACTCGAGAACTCATCAGCAGCAGCAGCAGCACGAGCTATCGTGGAAGCGACTGGTGGTGCGGAAATGGCTTAACATCGCCACCAGCAACTCTGATTAC...

XM_057938678.1
CACATCCACTATACACCAAAAAACAAAAAGCTCTTTATTTCTTCAACTTTTTTTCTGAGCCGACACAGGAAAAATCTAGAAGCTCACTAGCTCAGTTCCAGCTAATCTTCAGAATCTTCATTGTTTTGATTATCTCGTGATGAAGAAGATCAACTCGAGAACTCATCAGCAGCAGCAGCAGCACGAGAAAAATTGGGCTGAAATATTGTGTTTCGCTTGCGCGTGCCTACAGCTATCGTGGAAGCGACTGGTGGTGCGGA...

CDS

5 records

下载 CDS FASTA

LOC131010964
ATGAAGAAGATCAACTCGAGAACTCATCAGCAGCAGCAGCAGCACGAGAAAAATTGGGCTGAAATATTGTGTTTCGCTTGCGCGTGCCTACAGCTATCGTGGAAGCGACTGGTGGTGCGGAAATGGCTTAACATCGCCACCAGCAACTCTGATTACTCTGCGGATAGCGAGTCCGACTCCGAATCCGAATCAGAAATTTGTGATTATGGCGGAGAGTCGCGGTTCAAGAACGAAAAGCTGATTGGACTTCAGGTTGATGC...

Protein

5 records

下载 Protein FASTA

XP_057794657.1
MKKINSRTHQQQQQHEKNWAEILCFACACLQLSWKRLVVRKWLNIATSNSDYSADSESDSESESEICDYGGESRFKNEKLIGLQVDAAGALDALPRLRRRKSETFRAQYINAKDIRICAATWNVGGRIPPDDIDLDGWLDIDNPADIYVIGLQEMIPLNAGNIFGAEDNRPVSKWENLIRETLNQVPPTTKFKSYSEPPSPSKYKPSEDAPDVEDEILLESDSDVEEEIHPLNEESDVFEEIGDGRVIGDDIACADPSVS...

XP_057794658.1
MKKINSRTHQQQQQHEKNWAEILCFACACLQLSWKRLVVRKWLNIATSNSDYSADSESDSESESEICDYGGESRFKNEKLIGLQVDAAGALDALPRLRRRKSETFRAQYINAKDIRICAATWNVGGRIPPDDIDLDGWLDIDNPADIYVIGLQEMIPLNAGNIFGAEDNRPVSKWENLIRETLNQVPPTTKFKSYSEPPSPSKYKPSEDAPDVEDEILLESDSDVEEEIHPLNEESDVFEEIGDGRVIGDDIACADPSVS...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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