Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004034`

染色体: Chr02 坐标: 62630314-62633184 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004034`
名称	SmilChr02G004034
描述	probable choline kinase 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62630314 - 62633184 / `-`

ID 对照

NCBI Gene ID	`LOC131010965`
GeneID	`131010965`
locus_tag	`-`
NCBI Name	`LOC131010965`
原始查询	`SmilChr02G004034`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	probable choline kinase 1
产物	probable choline kinase 1
Arabidopsis	`AT1G71697` (CK1) choline kinase 1 [Source:NCBI gene (formerly Entrezgene);Acc:843500] identity=62.1; qcov=0.953; evalue=3.99e-159; confidence=high
Rice	`Os05g0535400` - identity=60.3; qcov=0.918; evalue=5.57e-153; confidence=high
GO	GO:0004103 (choline kinase activity); GO:0004305 (ethanolamine kinase activity); GO:0005737 (cytoplasm); GO:0006646 (phosphatidylethanolamine biosynthetic process); GO:0006656 (phosphatidylcholine biosynthetic process)
KEGG	smil00564 (Glycerophospholipid metabolism - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF01633 (Choline_kinase); PF01636 (APH)
InterPro	-
eggNOG	-
NR	GeneID:131010965

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794664.1`
2	Cytoplasm	细胞质	1.00000	`XP_057794664.1`
3	Cytosol	细胞质基质	0.60000	`XP_057794664.1`
4	Chromosome	染色体	0.00000	`XP_057794664.1`
5	Centromere	着丝粒	0.00000	`XP_057794664.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62630509`	`TTG`	`T`	2bp_deletion	frameshift_variant	51	A1,A14,A16,A20,A23,A4,A5,A7,B1,B100,B102,B118,B124,B126,B135,B136,B18,B19,B2,B21,B34,B38,B39,B4,B42,B43,B48,B61,B62,B70,B76,B77,B81,B84,B95,C13,C14,C20,C21,C33,C35,C38,C39,C44,C47,C52,C57,C59,C70,C81,D7
`Chr2:62630537`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	A11,B112,B35
`Chr2:62630561`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B122,B7,C40
`Chr2:62630600`	`C`	`CAT`	2bp_insertion	frameshift_variant	48	A1,A16,A20,A23,A4,A5,A7,B1,B100,B102,B110,B118,B126,B135,B136,B18,B21,B29,B34,B38,B39,B4,B42,B43,B48,B61,B62,B70,B77,B81,B84,B95,C13,C14,C20,C21,C33,C35,C39,C44,C47,C5,C52,C57,C59,C70,C81,D7
`Chr2:62630628`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A18,A24,B82
`Chr2:62630717`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C84
`Chr2:62631585`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C7
`Chr2:62631614`	`GC`	`G`	1bp_deletion	frameshift_variant	97	A1,A11,A14,A15,A19,A24,A25,A5,A7,B10,B104,B105,B110,B112,B119,B122,B126,B13,B132,B136,B137,B138,B19,B2,B22,B25,B27,B30,B33,B34,B35,B36,B39,B41,B42,B43,B45,B48,B49,B53,B54,B56,B57,B58,B6,B60,B66,B68,B7,B71,B74,B76,B77,B8,B80,B82,B85,B88,B90,B91,B93,B95,B96,B97,B98,C10,C13,C22,C23,C24,C27,C28,C29,C34,C38,C4,C42,C45,C48,C49,C5,C50,C51,C55,C56,C59,C6,C63,C72,C76,C78,C84,C9,D10,D2,D5,D8
`Chr2:62631744`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:62631931`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	A8,B35
`Chr2:62631947`	`C`	`T`	EMS_canonical_SNV	CDS_variant	4	C40,C44,C49,C71
`Chr2:62632335`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C40

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794664.1

365 aa

182

365

Choline_kinase

APH

PF01633 Choline_kinase 41-337 aa PF01636 APH 66-248 aa

XP_057794665.1

365 aa

182

365

Choline_kinase

APH

PF01633 Choline_kinase 41-337 aa PF01636 APH 66-248 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794664.1`	Pfam	`PF01633`	Choline_kinase	Domain	41	337	2.4e-97	326.6	Choline/ethanolamine kinase
`XP_057794664.1`	Pfam	`PF01636`	APH	Domain	66	248	2.4e-13	51.1	Phosphotransferase enzyme family
`XP_057794665.1`	Pfam	`PF01633`	Choline_kinase	Domain	41	337	2.4e-97	326.6	Choline/ethanolamine kinase
`XP_057794665.1`	Pfam	`PF01636`	APH	Domain	66	248	2.4e-13	51.1	Phosphotransferase enzyme family

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938681.1
ATACCAGTTACACAAACCGTTTTTGAGACATTCAAATTTTCTCTTAACAAATTATAAAAGTAAAAGAATAATAATTAAAAGTAGTGAGGAAAAAAAAAAGGAAACTAGAGCAAGTTCGCTGCGAGATCAAAAGCTGATTCTTGGTAGACTTCTCTCCCTGCATTTTACAGAAGTTGAAATACTCAAAGATTTGATTTCATTTTGTGGGATAGTTGTTATATCGGTTTTTGTTGAAGAAAATTGTGGTGATTGTTTGATGG...

XM_057938682.1
CACAAACCGTTTTTGAGACATTCAAATTTTCTCTTAACAAATTATAAAAGTAAAAGAATAATAATTAAAAGTAGTGAGGAAAAAAAAAAGGAAACTAGAGCAAGTTCGCTGCGAGATCAAAAGCTGATTCTTGGTGTTTTTGTTGAAGAAAATTGTGGTGATTGTTTGATGGCGGTGAAGACGAATGGATTTGTTGGAGGCATTTGGCCGGAGGGATTGATGCAGCTGCTTGCGTCGCTTGCTTCGAGTTGGGGCGAAGT...

CDS

2 records

下载 CDS FASTA

LOC131010965
ATGGCGGTGAAGACGAATGGATTTGTTGGAGGCATTTGGCCGGAGGGATTGATGCAGCTGCTTGCGTCGCTTGCTTCGAGTTGGGGCGAAGTGTTTGATCATGAAGGTTTGAAGGTGCTTCATTTGAGTGGTGCAATGACTAATGTGGTGTATAGAGTTAGCTGGCCTATTAAGAAGGGTGATGGTGATGGTGATGGTGCGAGGACTGTCTTGGTTCGGGTGTATGGCAAGGGGCTCGATCTGTTTTTCAACCGGGAAGA...

Protein

2 records

下载 Protein FASTA

XP_057794664.1
MAVKTNGFVGGIWPEGLMQLLASLASSWGEVFDHEGLKVLHLSGAMTNVVYRVSWPIKKGDGDGDGARTVLVRVYGKGLDLFFNREEEIRTFECLSEHGYGPRLLGQFTGGRVEDFIYARTLSSADLRDPETAALIAAKMRDFHELEMPGPKEPLLWNRLRTWISEAKNLCSPEHAKEYQLHILEQEINQLEEAISMDHQKIGFCHNDMQYGNIMIDDNDSTLTIIDYEYASYNPVAYDIANHFCEMAANYHTDTPHILD...

XP_057794665.1
MAVKTNGFVGGIWPEGLMQLLASLASSWGEVFDHEGLKVLHLSGAMTNVVYRVSWPIKKGDGDGDGARTVLVRVYGKGLDLFFNREEEIRTFECLSEHGYGPRLLGQFTGGRVEDFIYARTLSSADLRDPETAALIAAKMRDFHELEMPGPKEPLLWNRLRTWISEAKNLCSPEHAKEYQLHILEQEINQLEEAISMDHQKIGFCHNDMQYGNIMIDDNDSTLTIIDYEYASYNPVAYDIANHFCEMAANYHTDTPHILD...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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