当前解析结果
SmilChr02G004035| 统一新 Gene ID | SmilChr02G004035 |
|---|---|
| 名称 | SmilChr02G004035 |
| 描述 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62652163 - 62655801 / + |
| NCBI Gene ID | LOC131010967 |
|---|---|
| GeneID | 131010967 |
| locus_tag | - |
| NCBI Name | LOC131010967 |
| 原始查询 | SmilChr02G004035 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | S-adenosylmethionine carrier 1, chloroplastic/mitochondrial-like |
| 产物 | S-adenosylmethionine carrier 1%2C chloroplastic/mitochondrial-like |
| Arabidopsis | AT4G39460 (SAMC1)S-adenosylmethionine carrier 1 [Source:NCBI gene (formerly Entrezgene);Acc:830101] identity=75.7; qcov=0.91; evalue=1.99e-158; confidence=high |
| Rice | Os05g0361900- identity=74.4; qcov=0.901; evalue=4.77e-157; confidence=high |
| GO | GO:0000095 (S-adenosyl-L-methionine transmembrane transporter activity); GO:0005743 (mitochondrial inner membrane); GO:0055085 (transmembrane transport) |
| KEGG | - |
| Pfam | PF00153 (Mito_carr) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010967 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Mitochondrion | 线粒体 | 1.00000 | XP_057794668.1 |
| 2 | Mitochondrion membrane | 线粒体膜 | 1.00000 | XP_057794668.1 |
| 3 | Mitochondrion inner membrane | 线粒体内膜 | 0.80000 | XP_057794668.1 |
| 4 | Chloroplast membrane | 叶绿体膜 | 0.20000 | XP_057794668.1 |
| 5 | Nucleus | 细胞核 | 0.00000 | XP_057794668.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62652406 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | A21,B104,B140,D11,D7 |
Chr2:62652810 |
C |
CT |
1bp_insertion | frameshift_variant | 1 | A20 |
Chr2:62652810 |
C |
CT |
1bp_insertion | CDS_variant | 1 | A20 |
Chr2:62653079 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | B83,C77 |
Chr2:62653099 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C8 |
Chr2:62653105 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | A14,B119,C38 |
Chr2:62653112 |
ATC |
A |
2bp_deletion | frameshift_variant | 2 | B119,B21 |
Chr2:62653112 |
ATC |
A |
2bp_deletion | CDS_variant | 2 | B119,B21 |
Chr2:62653116 |
AAT |
A |
2bp_deletion | frameshift_variant | 2 | B119,B21 |
Chr2:62653116 |
AAT |
A |
2bp_deletion | CDS_variant | 2 | B119,B21 |
Chr2:62653119 |
TG |
T |
1bp_deletion | frameshift_variant | 3 | B111,B5,B63 |
Chr2:62653119 |
TG |
T |
1bp_deletion | CDS_variant | 3 | B111,B5,B63 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794668.1PF00153
Mito_carr 40-110 aa
PF00153
Mito_carr 116-197 aa
PF00153
Mito_carr 208-297 aa
XP_057794669.1PF00153
Mito_carr 40-110 aa
PF00153
Mito_carr 116-197 aa
PF00153
Mito_carr 208-297 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794668.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 40 | 110 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
XP_057794668.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 116 | 197 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
XP_057794668.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 208 | 297 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
XP_057794669.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 40 | 110 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
XP_057794669.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 116 | 197 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
XP_057794669.1 |
Pfam | PF00153 |
Mito_carr | Repeat | 208 | 297 | 1.6e-58 | 195.1 | Mitochondrial carrier protein |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
2 records
下载 cDNA FASTA2 records
下载 CDS FASTA2 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。