Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004041`

染色体: Chr02 坐标: 62719642-62725784 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004041`
名称	SmilChr02G004041
描述	dolichol-phosphate mannosyltransferase subunit 1
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62719642 - 62725784 / `-`

ID 对照

NCBI Gene ID	`LOC131010974`
GeneID	`131010974`
locus_tag	`-`
NCBI Name	`LOC131010974`
原始查询	`SmilChr02G004041`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	dolichol-phosphate mannosyltransferase subunit 1
产物	dolichol-phosphate mannosyltransferase subunit 1
Arabidopsis	`AT1G20575` (DPMS1) Nucleotide-diphospho-sugar transferases superfamily protein [Source:NCBI gene (formerly Entrezgene);Acc:838646] identity=89.3; qcov=1; evalue=2.33e-162; confidence=high
Rice	`Os03g0824400` - identity=84.6; qcov=0.996; evalue=6.71e-156; confidence=high
GO	GO:0004582 (dolichyl-phosphate beta-D-mannosyltransferase activity); GO:0005789 (endoplasmic reticulum membrane); GO:0006506 (GPI anchor biosynthetic process); GO:0019348 (GO:0019348); GO:0035269 (protein O-linked glycosylation via mannose)
KEGG	smil00510 (N-Glycan biosynthesis - Salvia miltiorrhiza (redroot sage)); smil01100 (Metabolic pathways - Salvia miltiorrhiza (redroot sage))
Pfam	PF00535 (Glycos_transf_2); PF10111 (Glyco_tranf_2_2); PF13641 (Glyco_tranf_2_3)
InterPro	-
eggNOG	-
NR	GeneID:131010974

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Endoplasmic reticulum	内质网	1.00000	`XP_057794676.1`
2	Endoplasmic reticulum membrane	内质网膜	1.00000	`XP_057794676.1`
3	Nucleus	细胞核	0.00000	`XP_057794676.1`
4	Chromosome	染色体	0.00000	`XP_057794676.1`
5	Centromere	着丝粒	0.00000	`XP_057794676.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62719898`	`G`	`A`	EMS_canonical_SNV	CDS_variant	5	B129,B131,B57,B9,C67
`Chr2:62721372`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:62721393`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B35

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794676.1

241 aa

120

241

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 10-218 aa PF10111 Glyco_tranf_2_2 11-105 aa PF00535 Glycos_transf_2 11-179 aa

XP_057794677.1

241 aa

120

241

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 10-218 aa PF10111 Glyco_tranf_2_2 11-105 aa PF00535 Glycos_transf_2 11-179 aa

XP_057794678.1

241 aa

120

241

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 10-218 aa PF10111 Glyco_tranf_2_2 11-105 aa PF00535 Glycos_transf_2 11-179 aa

XP_057794679.1

241 aa

120

241

Glyco_tranf_2_3

Glyco_tranf_2_2

Glycos_transf_2

PF13641 Glyco_tranf_2_3 10-218 aa PF10111 Glyco_tranf_2_2 11-105 aa PF00535 Glycos_transf_2 11-179 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794676.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	10	218	3.6e-11	43.9	Glycosyltransferase like family 2
`XP_057794676.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	11	105	2.4e-06	28.0	Glycosyltransferase like family 2
`XP_057794676.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	11	179	1.9e-39	136.0	Glycosyl transferase family 2
`XP_057794677.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	10	218	3.6e-11	43.9	Glycosyltransferase like family 2
`XP_057794677.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	11	105	2.4e-06	28.0	Glycosyltransferase like family 2
`XP_057794677.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	11	179	1.9e-39	136.0	Glycosyl transferase family 2
`XP_057794678.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	10	218	3.6e-11	43.9	Glycosyltransferase like family 2
`XP_057794678.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	11	105	2.4e-06	28.0	Glycosyltransferase like family 2
`XP_057794678.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	11	179	1.9e-39	136.0	Glycosyl transferase family 2
`XP_057794679.1`	Pfam	`PF13641`	Glyco_tranf_2_3	Domain	10	218	3.6e-11	43.9	Glycosyltransferase like family 2
`XP_057794679.1`	Pfam	`PF10111`	Glyco_tranf_2_2	Family	11	105	2.4e-06	28.0	Glycosyltransferase like family 2
`XP_057794679.1`	Pfam	`PF00535`	Glycos_transf_2	Domain	11	179	1.9e-39	136.0	Glycosyl transferase family 2

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

4 records

下载 cDNA FASTA

XM_057938696.1
ATCTAAATAGTTCTCTGCATCTTCTCACGCCCCCTTTGCCGTCTATCTCTGAAATAAGCTCCCGCGCCGTCGTTCTCCCCGCCGCGCGCTTCGATCTCCGCCGTCTTCCCCGCCGCCCGCTCCGATATCCGTCGTCTATCTCTGCATCTTCTCCCCATCGTCGCCTTCAGTTGCTGCTGAAGGGCAAGCTGTGGCGCTTAGAGTGACGGCTGATCGTTGTGCATTCTATAATTGCAGATTTCTTGGTTGGCAGATACCAA...

XM_057938694.1
ATCTAAATAGTTCTCTGCATCTTCTCACGCCCCCTTTGCCGTCTATCTCTGAAATAAGCTCCCGCGCCGTCGTTCTCCCCGCCGCGCGCTTCGATCTCCGCCGTCTTCCCCGCCGCCCGCTCCGATATCCGTCGTCTATCTCTGCATCTTCTCCCCATCGTCGCCTTCAGTTGCTGCTGAAGGGTTCAGGGCAAGCTGTGGCGCTTAGAGTGACGGCTGATCGTTGTGCATTCTATAATTGCAGATTTCTTGGTTGGCAG...

CDS

4 records

下载 CDS FASTA

LOC131010974
ATGGAAGCCAAAGCGGAGGAGAACAAGTATAGCATAATCGTTCCCACCTACAACGAGCGCCTCAATATCGCTCTCATTGTTTACCTCATCTTCAAGCATCTCCCGAATGTAAATTTTGAGATCATAGTGGTGGATGATGGGAGTCCAGATGGAACTCAGGAAATTGTCAAACAGCTGCAGGAAGTATATGGAGAAGATCGTATCTTGTTGAGACCTAGACCAAAGAAGCTTGGCTTAGGGACGGCCTACGTTCACGGTTT...

Protein

4 records

下载 Protein FASTA

XP_057794676.1
MEAKAEENKYSIIVPTYNERLNIALIVYLIFKHLPNVNFEIIVVDDGSPDGTQEIVKQLQEVYGEDRILLRPRPKKLGLGTAYVHGLKHATGNFVVIMDADLSHHPKYLPSFIKKQMETGASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKSVLEDVINSCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVYGSSKLGGSEIVEYLKGLLYLLVTT

XP_057794677.1
MEAKAEENKYSIIVPTYNERLNIALIVYLIFKHLPNVNFEIIVVDDGSPDGTQEIVKQLQEVYGEDRILLRPRPKKLGLGTAYVHGLKHATGNFVVIMDADLSHHPKYLPSFIKKQMETGASIVTGTRYVKGGGVHGWNLMRKLTSRGANVLAQTFLWPGVSDLTGSFRLYKKSVLEDVINSCVSKGYVFQMEMIVRASRKGYHIEEVPITFVDRVYGSSKLGGSEIVEYLKGLLYLLVTT

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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JBrowse

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