当前解析结果
SmilChr02G004044| 统一新 Gene ID | SmilChr02G004044 |
|---|---|
| 名称 | SmilChr02G004044 |
| 描述 | cyclin-B2-3 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62747666 - 62751032 / - |
| NCBI Gene ID | LOC131010977 |
|---|---|
| GeneID | 131010977 |
| locus_tag | - |
| NCBI Name | LOC131010977 |
| 原始查询 | SmilChr02G004044 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | cyclin-B2-3 |
| 产物 | cyclin-B2-3 |
| Arabidopsis | AT1G20610 (CYCB2;3)Cyclin B2;3 [Source:NCBI gene (formerly Entrezgene);Acc:838650] identity=64.8; qcov=0.98; evalue=0; confidence=high |
| Rice | Os06g0726800 (cycB2)- identity=57.2; qcov=0.96; evalue=2.34e-163; confidence=high |
| GO | GO:0000079 (regulation of cyclin-dependent protein serine/threonine kinase activity); GO:0000307 (cyclin-dependent protein kinase holoenzyme complex); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005813 (centrosome); GO:0016538 (cyclin-dependent protein serine/threonine kinase regulator activity); GO:0044772 (mitotic cell cycle phase transition) |
| KEGG | - |
| Pfam | PF00134 (Cyclin_N); PF02984 (Cyclin_C) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010977 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794682.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057794682.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057794682.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057794682.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057794682.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62747965 |
G |
A |
EMS_canonical_SNV | CDS_variant | 4 | B35,B56,B96,D4 |
Chr2:62748000 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | C73,C83 |
Chr2:62748054 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C39 |
Chr2:62748060 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B35 |
Chr2:62748166 |
G |
A |
EMS_canonical_SNV | stop_gained | 37 | A11,B1,B104,B106,B11,B112,B114,B129,B134,B138,B16,B17,B31,B35,B41,B45,B61,B64,B67,B70,B90,B92,B93,C14,C2,C20,C21,C29,C54,C56,C58,C6,C65,C74,C82,D11,D6 |
Chr2:62748198 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C53 |
Chr2:62748228 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
Chr2:62748458 |
G |
A |
EMS_canonical_SNV | CDS_variant | 3 | B101,B33,C85 |
Chr2:62748471 |
G |
A |
EMS_canonical_SNV | CDS_variant | 5 | B110,B57,B88,C51,C65 |
Chr2:62748638 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | B132,B97,D1 |
Chr2:62750384 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B98 |
Chr2:62750539 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B32 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794682.1PF00134
Cyclin_N 193-318 aa
PF02984
Cyclin_C 320-436 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794682.1 |
Pfam | PF00134 |
Cyclin_N | Domain | 193 | 318 | 9.2e-47 | 158.6 | Cyclin, N-terminal domain |
XP_057794682.1 |
Pfam | PF02984 |
Cyclin_C | Domain | 320 | 436 | 2.6e-38 | 131.4 | Cyclin, C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。