Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004050`

染色体: Chr02 坐标: 62833526-62835253 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004050`
名称	SmilChr02G004050
描述	HMG1/2-like protein
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62833526 - 62835253 / `-`

ID 对照

NCBI Gene ID	`LOC131010983`
GeneID	`131010983`
locus_tag	`-`
NCBI Name	`LOC131010983`
原始查询	`SmilChr02G004050`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	HMG1/2-like protein
产物	HMG1/2-like protein
Arabidopsis	`AT1G20696` (HMGB3) high mobility group B3 [Source:NCBI gene (formerly Entrezgene);Acc:838659] identity=68.5; qcov=0.888; evalue=3.55e-50; confidence=medium
Rice	`Os09g0551600` - identity=59.9; qcov=0.923; evalue=9.14e-45; confidence=medium
GO	-
KEGG	-
Pfam	PF00505 (HMG_box); PF09011 (HMG_box_2)
InterPro	-
eggNOG	-
NR	GeneID:131010983

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Nucleus	细胞核	1.00000	`XP_057794688.1`
2	Nucleoplasm	核质	0.60000	`XP_057794688.1`
3	Cytosol	细胞质基质	0.60000	`XP_057794688.1`
4	Nucleolar fibrillar center	Nucleolar fibrillar center	0.20000	`XP_057794688.1`
5	Chromosome	染色体	0.20000	`XP_057794689.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62833767`	`G`	`A`	EMS_canonical_SNV	stop_gained	1	A21
`Chr2:62833767`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A21
`Chr2:62833779`	`G`	`A`	EMS_canonical_SNV	stop_gained	144	A14,A15,A18,A19,A20,A21,A23,A25,A5,A6,B1,B101,B103,B104,B105,B106,B11,B110,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B126,B127,B128,B13,B130,B132,B133,B134,B137,B138,B140,B15,B16,B17,B18,B21,B25,B28,B29,B30,B31,B33,B34,B35,B37,B38,B39,B40,B44,B46,B47,B48,B49,B50,B55,B57,B58,B59,B63,B64,B65,B66,B67,B68,B7,B71,B72,B73,B74,B77,B78,B79,B8,B82,B84,B86,B9,B91,B94,B95,B98,C10,C13,C14,C16,C17,C19,C2,C20,C23,C25,C26,C28,C29,C32,C33,C34,C35,C37,C38,C39,C4,C41,C43,C45,C46,C48,C5,C50,C52,C54,C55,C57,C58,C60,C62,C63,C64,C66,C68,C71,C73,C75,C77,C79,C8,C80,C81,C85,C87,D1,D2,D3,D5,D7,D8
`Chr2:62833792`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A10,B120,C7
`Chr2:62833874`	`CT`	`C`	1bp_deletion	frameshift_variant	173	A1,A10,A13,A14,A15,A18,A19,A2,A20,A21,A23,A25,A5,A6,A8,A9,B1,B101,B102,B103,B104,B105,B106,B11,B110,B114,B115,B117,B118,B119,B12,B120,B122,B123,B124,B126,B127,B128,B129,B13,B130,B132,B133,B134,B138,B14,B140,B15,B16,B17,B18,B21,B22,B25,B28,B29,B30,B31,B33,B34,B35,B37,B38,B39,B40,B44,B46,B47,B48,B49,B50,B51,B55,B57,B58,B59,B61,B63,B64,B65,B66,B67,B68,B7,B71,B72,B73,B74,B75,B77,B78,B79,B8,B80,B81,B82,B84,B85,B86,B87,B89,B9,B91,B94,B95,B98,C1,C10,C13,C14,C15,C16,C17,C19,C2,C20,C23,C25,C26,C28,C29,C3,C30,C32,C33,C34,C35,C36,C37,C38,C39,C4,C41,C42,C43,C44,C45,C46,C48,C5,C50,C51,C52,C53,C54,C55,C57,C58,C6,C60,C62,C63,C64,C66,C68,C71,C72,C73,C75,C77,C79,C8,C80,C81,C85,C86,C87,C9,D1,D2,D3,D5,D8
`Chr2:62833921`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D7
`Chr2:62834072`	`TCC`	`T`	2bp_deletion	frameshift_variant	89	A1,A11,A13,A2,A20,A21,A22,A25,A5,A8,A9,B1,B101,B104,B105,B106,B117,B119,B12,B120,B122,B123,B124,B125,B130,B134,B138,B14,B15,B16,B18,B2,B21,B22,B25,B29,B38,B40,B44,B47,B5,B50,B57,B63,B65,B66,B67,B71,B74,B75,B78,B8,B85,B86,B87,B89,B91,B95,C1,C14,C17,C2,C20,C23,C25,C28,C33,C36,C38,C39,C4,C42,C50,C51,C54,C58,C6,C60,C63,C71,C73,C75,C77,C8,C80,C85,C86,D5,D8

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794688.1

175 aa

175

HMG_box_2

HMG_box

PF09011 HMG_box_2 33-105 aa PF00505 HMG_box 36-105 aa

XP_057794689.1

143 aa

143

HMG_box_2

HMG_box

PF09011 HMG_box_2 33-105 aa PF00505 HMG_box 36-105 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794688.1`	Pfam	`PF09011`	HMG_box_2	Domain	33	105	2.4e-13	51.2	HMG-box domain
`XP_057794688.1`	Pfam	`PF00505`	HMG_box	Domain	36	105	2.5e-19	70.2	HMG (high mobility group) box
`XP_057794689.1`	Pfam	`PF09011`	HMG_box_2	Domain	33	105	1.4e-13	52.0	HMG-box domain
`XP_057794689.1`	Pfam	`PF00505`	HMG_box	Domain	36	105	1.5e-19	70.9	HMG (high mobility group) box

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

2 records

下载 cDNA FASTA

XM_057938706.1
ATATTCATTGCAGCATTTGATTTCATTTCTTTTTTCAAAATTTTACCATTTTTCAATAAATAATCACACATTAAATAACCTCACTTATCGCTAAAAAACACCTTCTCCATTTCATTCTCCCCTCGCCAAACCCTAATTTTCTGCCTTACATTAAAATGAAGGGAGGAAAATCTAAGGCCGATTCCAGAAAGGCGGACAGCAGGCTTGCTGTGAAAAAGCAGACGAAGAAGGAGAAGCAAGCTGCTAAGGACCCCAACAAG...

XM_057938705.1
ATTCATTGCAGCATTTGATTTCATTTCTTTTTTCAAAATTTTACCATTTTTCAATAAATAATCACACATTAAATAACCTCACTTATCGCTAAAAAACACCTTCTCCATTTCATTCTCCCCTCGCCAAACCCTAATTTTCTGCCTTACATTAAAATGAAGGGAGGAAAATCTAAGGCCGATTCCAGAAAGGCGGACAGCAGGCTTGCTGTGAAAAAGCAGACGAAGAAGGAGAAGCAAGCTGCTAAGGACCCCAACAAGCC...

CDS

2 records

下载 CDS FASTA

LOC131010983
ATGAAGGGAGGAAAATCTAAGGCCGATTCCAGAAAGGCGGACAGCAGGCTTGCTGTGAAAAAGCAGACGAAGAAGGAGAAGCAAGCTGCTAAGGACCCCAACAAGCCGAAGAGGGCTGCAAGTGCTTTCTTTGTTTTCATGGAGGACTTTAGGAAGCGGTACAAGGAAAAACACCCCAACAACAAATCTGTTGCTGCTGTTGGTAAAGCTGGTGGTGATGAGTGGAAGTCAATGAGTAAAGAGGACAAGGCCCCCTTCGT...

Protein

2 records

下载 Protein FASTA

XP_057794688.1
MKGGKSKADSRKADSRLAVKKQTKKEKQAAKDPNKPKRAASAFFVFMEDFRKRYKEKHPNNKSVAAVGKAGGDEWKSMSKEDKAPFVAVAEQRKEEYERQMKAYNKKLAGEEDEESDKSKSEVNDEEDEEGSGEVSVSEARFIHSSFVKNFGQTSVTRSRLLFQNFVQEEEEDDD

XP_057794689.1
MKGGKSKADSRKADSRLAVKKQTKKEKQAAKDPNKPKRAASAFFVFMEDFRKRYKEKHPNNKSVAAVGKAGGDEWKSMSKEDKAPFVAVAEQRKEEYERQMKAYNKKLAGEEDEESDKSKSEVNDEEDEEGSGEVSEEEEDDD

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

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