Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004051`

染色体: Chr02 坐标: 62836145-62839464 链方向: - 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004051`
名称	SmilChr02G004051
描述	uncharacterized SmilChr02G004051
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62836145 - 62839464 / `-`

ID 对照

NCBI Gene ID	`LOC131010984`
GeneID	`131010984`
locus_tag	`-`
NCBI Name	`LOC131010984`
原始查询	`SmilChr02G004051`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	hit=Os01g0798800; species=rice; confidence=medium
产物	hit=Os01g0798800; species=rice; confidence=medium
Arabidopsis	`AT5G45540` (AT5G45540) transmembrane protein, putative (DUF594) [Source:NCBI gene (formerly Entrezgene);Acc:834590] identity=32.8; qcov=0.691; evalue=2.29e-69; confidence=low
Rice	`Os01g0798800` - identity=40.6; qcov=1.07; evalue=5.31e-152; confidence=medium
GO	-
KEGG	-
Pfam	PF04578 (DUF594); PF13968 (DUF4220)
InterPro	-
eggNOG	-
NR	GeneID:131010984

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Cell membrane	细胞膜	1.00000	`XP_057794690.1`
2	Nucleus	细胞核	0.00000	`XP_057794690.1`
3	Chromosome	染色体	0.00000	`XP_057794690.1`
4	Centromere	着丝粒	0.00000	`XP_057794690.1`
5	Chromatin	染色质	0.00000	`XP_057794690.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62836419`	`T`	`TC`	1bp_insertion	frameshift_variant	1	B18
`Chr2:62836419`	`T`	`TC`	1bp_insertion	CDS_variant	1	B18
`Chr2:62836445`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C17
`Chr2:62836489`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	D10
`Chr2:62836500`	`C`	`T`	EMS_canonical_SNV	CDS_variant	2	B82,C12
`Chr2:62836568`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B50,C23
`Chr2:62836583`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	C54,C71
`Chr2:62836709`	`G`	`A`	EMS_canonical_SNV	CDS_variant	2	D10,D11
`Chr2:62836782`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C75
`Chr2:62836805`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	B103
`Chr2:62836874`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	B84
`Chr2:62836996`	`ACT`	`A`	2bp_deletion	frameshift_variant	7	A19,A6,B126,B30,B42,B43,C26

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794690.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

XP_057794691.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

XP_057794692.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

XP_057794693.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

XP_057794694.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

XP_057794695.1

658 aa

329

658

DUF4220

DUF594

PF13968 DUF4220 51-385 aa PF04578 DUF594 591-640 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794690.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794690.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594
`XP_057794691.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794691.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594
`XP_057794692.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794692.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594
`XP_057794693.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794693.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594
`XP_057794694.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794694.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594
`XP_057794695.1`	Pfam	`PF13968`	DUF4220	Family	51	385	3.4e-97	326.8	Domain of unknown function (DUF4220)
`XP_057794695.1`	Pfam	`PF04578`	DUF594	Family	591	640	5.4e-21	74.7	Protein of unknown function, DUF594

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

6 records

下载 cDNA FASTA

XM_057938710.1
TCTAAAAAAACTGAAAAATTAGAAAAGTAGATAGAAAATGGTGAAAAAATGTGCAGTAGAGGCAGCAGCGAGTTTGAGTCGAATGCGCGAAAGTCCTCAACCAAAAAAATTGTTGGGAATTTTAAGTTGTTGACAGAAAAGTGGTTTGTTGCTTTGATTGTTGTGGAGAAGAGGAGTGCTTATGGAAGAAGTTCTACTAAGATTGATCACATTCTTGGAAGAATGGGAAGTCAGGGTGTTCATAATCCTCAGCCTCGCGT...

XM_057938711.1
AAAAAACTGAAAAATTAGAAAAGTAGATAGAAAATGGTGAAAAAATGTGCAGTAGAGGCAGCAGCGAGTTTGAGTCGAATGCGCGAAAGTCCTCAACCAAAAAAATTGTTGGGAATTTTAAGTTGTTGACAGAAAAGAAAAGGACTATTTTTACTTCTTGGTCTACATATATACTGTGTATGGTGGCGGCTTGCAGTTGAGAGGAGTGCTTATGGAAGAAGTTCTACTAAGATTGATCACATTCTTGGAAGAATGGGAAG...

CDS

6 records

下载 CDS FASTA

LOC131010984
ATGGAAGAAGTTCTACTAAGATTGATCACATTCTTGGAAGAATGGGAAGTCAGGGTGTTCATAATCCTCAGCCTCGCGTTGCAGATCTTACTGATCATGTTGGGCAATCGCAGGAAGTATGTATGCAAACTTTGGATAAGAATCATTCTCTGGTGTGCTTACTTATTGGCAGATTGGGTAGCAGTCGTTTCACTTGGCATCACCTCGAAGAACACTCTTGATGCTTGCCACAAGAGAATCAAGGTTGAGCCCGGGATTGA...

Protein

6 records

下载 Protein FASTA

XP_057794690.1
MEEVLLRLITFLEEWEVRVFIILSLALQILLIMLGNRRKYVCKLWIRIILWCAYLLADWVAVVSLGITSKNTLDACHKRIKVEPGIELRWFWAQFFVLHLGGPDTITAYSLEDNELWLRHLVGMVIQTGLASYVLLVALRSSNWLPSLSVLIFIAGAIKYGERLYTLRAANSEHFRDSMLPEPDPGPNYAKFMEEYTMKEAEGYEVGVDEVIEIPVLAQHDFPDKPGIHEAYDLFLTFKRLFADAILSFQDRDSSRSYFQ...

XP_057794691.1
MEEVLLRLITFLEEWEVRVFIILSLALQILLIMLGNRRKYVCKLWIRIILWCAYLLADWVAVVSLGITSKNTLDACHKRIKVEPGIELRWFWAQFFVLHLGGPDTITAYSLEDNELWLRHLVGMVIQTGLASYVLLVALRSSNWLPSLSVLIFIAGAIKYGERLYTLRAANSEHFRDSMLPEPDPGPNYAKFMEEYTMKEAEGYEVGVDEVIEIPVLAQHDFPDKPGIHEAYDLFLTFKRLFADAILSFQDRDSSRSYFQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

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