当前解析结果
SmilChr02G004052| 统一新 Gene ID | SmilChr02G004052 |
|---|---|
| 名称 | SmilChr02G004052 |
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62844950 - 62847799 / + |
| NCBI Gene ID | LOC131009861 |
|---|---|
| GeneID | 131009861 |
| locus_tag | - |
| NCBI Name | LOC131009861 |
| 原始查询 | SmilChr02G004052 |
| 来源 | GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | putative inactive disease susceptibility protein LOV1 |
| 产物 | putative inactive disease susceptibility protein LOV1 |
| Arabidopsis | AT5G35450 (AT5G35450)Disease resistance protein (CC-NBS-LRR class) family [Source:NCBI gene (formerly Entrezgene);Acc:833508] identity=29.4; qcov=0.797; evalue=6.58e-73; confidence=low |
| Rice | Os12g0500500- identity=31.2; qcov=0.784; evalue=9.53e-82; confidence=low |
| GO | GO:0005515 (protein binding); GO:0043531 (ADP binding); GO:0098542 (defense response to other organism) |
| KEGG | - |
| Pfam | PF00931 (NB-ARC); PF13855 (LRR_8); PF23559 (WHD_DRP); PF23598 (LRR_14) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131009861 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Cell membrane | 细胞膜 | 1.00000 | XP_057793248.1 |
| 2 | Nucleus | 细胞核 | 0.00000 | XP_057793248.1 |
| 3 | Chromosome | 染色体 | 0.00000 | XP_057793248.1 |
| 4 | Centromere | 着丝粒 | 0.00000 | XP_057793248.1 |
| 5 | Chromatin | 染色质 | 0.00000 | XP_057793248.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62844974 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | A22 |
Chr2:62845080 |
TC |
T |
1bp_deletion | frameshift_variant | 120 | A10,A16,A18,A2,A22,A25,A6,B1,B10,B100,B102,B105,B108,B109,B112,B114,B115,B119,B120,B121,B123,B124,B125,B126,B128,B130,B132,B133,B134,B137,B138,B139,B16,B17,B19,B25,B26,B29,B30,B32,B38,B39,B47,B5,B50,B51,B58,B59,B6,B60,B64,B65,B66,B74,B75,B77,B8,B81,B82,B83,B86,B87,B90,B92,B95,B99,C10,C11,C13,C16,C18,C19,C2,C20,C21,C22,C23,C25,C26,C28,C3,C31,C34,C35,C36,C37,C4,C40,C42,C45,C47,C49,C5,C52,C56,C57,C59,C60,C63,C64,C66,C67,C69,C7,C70,C75,C76,C8,C80,C82,C84,C85,C86,C87,C9,D10,D11,D2,D6,D9 |
Chr2:62845186 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,D8 |
Chr2:62845296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A21 |
Chr2:62845675 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | C75 |
Chr2:62845696 |
TG |
T |
1bp_deletion | frameshift_variant | 1 | C11 |
Chr2:62845696 |
TG |
T |
1bp_deletion | CDS_variant | 1 | C11 |
Chr2:62845835 |
C |
T |
EMS_canonical_SNV | CDS_variant | 2 | D10,D11 |
Chr2:62845901 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B2,C12 |
Chr2:62846595 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62846619 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr2:62846786 |
C |
T |
EMS_canonical_SNV | CDS_variant | 3 | C54,C71,D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057793248.1PF00931
NB-ARC 232-397 aa
PF23559
WHD_DRP 469-540 aa
PF23598
LRR_14 610-902 aa
PF13855
LRR_8 636-689 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057793248.1 |
Pfam | PF00931 |
NB-ARC | Domain | 232 | 397 | 5.9e-33 | 114.6 | NB-ARC domain |
XP_057793248.1 |
Pfam | PF23559 |
WHD_DRP | Domain | 469 | 540 | 3.3e-16 | 59.8 | Disease resistance protein Winged helix domain |
XP_057793248.1 |
Pfam | PF23598 |
LRR_14 | Repeat | 610 | 902 | 3.7e-43 | 148.4 | Leucine-rich repeat region |
XP_057793248.1 |
Pfam | PF13855 |
LRR_8 | Repeat | 636 | 689 | 1.6e-07 | 31.7 | Leucine rich repeat |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。