当前解析结果
SmilChr02G004053| 统一新 Gene ID | SmilChr02G004053 |
|---|---|
| 名称 | SmilChr02G004053 |
| 描述 | uncharacterized SmilChr02G004053 |
| 染色体 / SeqID | Chr02 / NC_080388.1 |
| 坐标与链方向 | 62849768 - 62861677 / - |
| NCBI Gene ID | LOC131010985 |
|---|---|
| GeneID | 131010985 |
| locus_tag | - |
| NCBI Name | LOC131010985 |
| 原始查询 | SmilChr02G004053 |
| 来源 | GFF basic annotation; NCBI GO GAF; KEGG smil; Pfam-A/HMMER; Arabidopsis/Rice homolog |
|---|---|
| 描述 | RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662]; symbol=AT1G20720; hit=AT1G20720; species=arabidopsis; confidence=high |
| 产物 | RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662]; symbol=AT1G20720; hit=AT1G20720; species=arabidopsis; confidence=high |
| Arabidopsis | AT1G20720 (AT1G20720)RAD3-like DNA-binding helicase protein [Source:NCBI gene (formerly Entrezgene);Acc:838662] identity=50.6; qcov=0.993; evalue=0; confidence=high |
| Rice | Os09g0551800- identity=54.1; qcov=0.613; evalue=0; confidence=high |
| GO | GO:0003677 (DNA binding); GO:0003678 (DNA helicase activity); GO:0005524 (ATP binding); GO:0005634 (nucleus); GO:0006289 (nucleotide-excision repair); GO:0016818 (hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides); GO:1990918 (double-strand break repair involved in meiotic recombination) |
| KEGG | smil03440 (Homologous recombination - Salvia miltiorrhiza (redroot sage)); smil03460 (Fanconi anemia pathway - Salvia miltiorrhiza (redroot sage)) |
| Pfam | PF06733 (DEAD_2); PF13307 (Helicase_C_2) |
| InterPro | - |
| eggNOG | - |
| NR | GeneID:131010985 |
| Rank | 定位位置 | 中文 | Score | Protein ID |
|---|---|---|---|---|
| 1 | Nucleus | 细胞核 | 1.00000 | XP_057794696.1 |
| 2 | Chromosome | 染色体 | 0.00000 | XP_057794696.1 |
| 3 | Centromere | 着丝粒 | 0.00000 | XP_057794696.1 |
| 4 | Chromatin | 染色质 | 0.00000 | XP_057794696.1 |
| 5 | Telomere | 端粒 | 0.00000 | XP_057794696.1 |
下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。
| 位置 | REF | ALT | 类型 | 影响 | 携带材料数 | 材料 |
|---|---|---|---|---|---|---|
Chr2:62850480 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | A2 |
Chr2:62850731 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C51 |
Chr2:62850800 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:62850816 |
G |
A |
EMS_canonical_SNV | CDS_variant | 1 | D1 |
Chr2:62850826 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | B140 |
Chr2:62850827 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | A20,C51 |
Chr2:62850861 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B41,C40 |
Chr2:62850959 |
G |
A |
EMS_canonical_SNV | CDS_variant | 2 | B107,B140 |
Chr2:62851052 |
C |
CA |
1bp_insertion | frameshift_variant | 45 | A23,A24,A25,A6,A7,B108,B109,B121,B124,B128,B133,B138,B15,B19,B2,B20,B22,B28,B3,B31,B34,B5,B50,B60,B69,B7,B70,B75,B76,B78,B86,B98,B99,C1,C16,C18,C23,C25,C28,C61,C75,C80,C81,C87,D5 |
Chr2:62851093 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | C37 |
Chr2:62851296 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D10 |
Chr2:62851446 |
C |
T |
EMS_canonical_SNV | CDS_variant | 1 | D11 |
结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。
XP_057794696.1PF06733
DEAD_2 155-319 aa
PF13307
Helicase_C_2 553-764 aa
| Protein ID | 来源 | 结构域编号 | 结构域名称 | 类型 | 起始 aa | 终止 aa | E-value | Score | 说明 |
|---|---|---|---|---|---|---|---|---|---|
XP_057794696.1 |
Pfam | PF06733 |
DEAD_2 | Family | 155 | 319 | 3.7e-43 | 147.9 | DEAD_2 |
XP_057794696.1 |
Pfam | PF13307 |
Helicase_C_2 | Domain | 553 | 764 | 2.2e-52 | 178.2 | Helicase C-terminal domain |
每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。
1 records
下载 cDNA FASTA1 records
下载 CDS FASTA1 records
下载 Protein FASTAupstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。