Gene Card 基因详情

支持统一新 ID、NCBI Gene ID、GeneID、locus_tag、Transcript ID、Protein ID，以及已人工核对的文献基因名查询。页面会先解析到丹参统一基因，再整合坐标、序列、注释、亚细胞定位、EMS 突变和下载入口。

当前解析结果

`SmilChr02G004055`

染色体: Chr02 坐标: 62868533-62877844 链方向: + 类型: protein_coding

基本信息

统一新 Gene ID	`SmilChr02G004055`
名称	SmilChr02G004055
描述	uncharacterized SmilChr02G004055
染色体 / SeqID	Chr02 / NC_080388.1
坐标与链方向	62868533 - 62877844 / `+`

ID 对照

NCBI Gene ID	`LOC131010991`
GeneID	`131010991`
locus_tag	`-`
NCBI Name	`LOC131010991`
原始查询	`SmilChr02G004055`

查看完整 ID 对照表

功能注释

来源	GFF basic annotation; NCBI GO GAF; Pfam-A/HMMER; Arabidopsis/Rice homolog
描述	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838666]; symbol=AT1G20760; hit=AT1G20760; species=arabidopsis; confidence=high
产物	Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838666]; symbol=AT1G20760; hit=AT1G20760; species=arabidopsis; confidence=high
Arabidopsis	`AT1G20760` (AT1G20760) Calcium-binding EF hand family protein [Source:NCBI gene (formerly Entrezgene);Acc:838666] identity=46.3; qcov=1.07; evalue=0; confidence=high
Rice	`Os03g0130500` - identity=44.2; qcov=1.09; evalue=0; confidence=medium
GO	GO:0005509 (calcium ion binding); GO:0005515 (protein binding); GO:0005634 (nucleus); GO:0005737 (cytoplasm); GO:0005886 (plasma membrane); GO:0006897 (endocytosis); GO:0016197 (endosomal transport)
KEGG	-
Pfam	PF12763 (EH); PF13202 (EF-hand_5)
InterPro	-
eggNOG	-
NR	GeneID:131010991

打开注释模块

亚细胞定位 Top 5

Rank	定位位置	中文	Score	Protein ID
1	Golgi apparatus	高尔基体	1.00000	`XP_057794702.1`
2	Trans-golgi network	Trans-golgi network	1.00000	`XP_057794702.1`
3	Cytoplasm	细胞质	0.40000	`XP_057794702.1`
4	Clathrin-coated vesicle	Clathrin-coated vesicle	0.40000	`XP_057794702.1`
5	Cytosol	细胞质基质	0.40000	`XP_057794702.1`

进入亚细胞定位查询

EMS 诱变突变

下表显示该基因在丹参 EMS 材料中的前 12 个候选突变；完整结果可进入 EMS 突变库继续筛选或下载。

位置	REF	ALT	类型	影响	携带材料数	材料
`Chr2:62868804`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,C40,D10,D11
`Chr2:62868860`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C51
`Chr2:62869751`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C40,C5
`Chr2:62869782`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	A18
`Chr2:62870126`	`CA`	`C`	1bp_deletion	frameshift_variant	158	A14,A18,A19,A20,A22,A23,A24,A25,A4,A6,A7,A9,B10,B100,B102,B103,B105,B106,B107,B108,B109,B11,B110,B111,B112,B114,B115,B118,B121,B123,B124,B128,B13,B130,B132,B133,B134,B135,B136,B139,B14,B15,B16,B19,B2,B20,B21,B22,B23,B25,B28,B3,B31,B34,B36,B37,B38,B39,B45,B48,B5,B50,B51,B53,B55,B56,B57,B59,B6,B60,B63,B64,B67,B69,B7,B70,B72,B74,B75,B76,B78,B79,B8,B81,B83,B85,B86,B88,B89,B90,B92,B93,B95,B96,B98,B99,C1,C10,C11,C13,C14,C16,C18,C19,C2,C20,C21,C23,C25,C28,C29,C30,C31,C33,C34,C35,C38,C39,C40,C41,C43,C44,C45,C48,C49,C5,C51,C56,C59,C6,C60,C61,C63,C64,C65,C66,C69,C70,C73,C75,C76,C77,C8,C80,C81,C82,C84,C85,C87,C9,D1,D2,D4,D5,D6,D7,D8,D9
`Chr2:62870292`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	A23
`Chr2:62870521`	`G`	`A`	EMS_canonical_SNV	CDS_variant	4	B41,C40,D10,D11
`Chr2:62870829`	`C`	`T`	EMS_canonical_SNV	CDS_variant	1	C37
`Chr2:62872233`	`C`	`T`	EMS_canonical_SNV	CDS_variant	3	B41,C40,D10
`Chr2:62872271`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	A2,A24,C30
`Chr2:62872277`	`G`	`A`	EMS_canonical_SNV	CDS_variant	3	B108,B50,C23
`Chr2:62872329`	`G`	`A`	EMS_canonical_SNV	CDS_variant	1	C37

进入 EMS 突变库

预测功能结构域

结构域结果来自 Pfam-A HMM 数据库和 HMMER hmmscan；位置为对应蛋白序列上的氨基酸坐标。

XP_057794702.1

1021 aa

510

1021

EF-hand_5

PF12763 EH 6-76 aa PF13202 EF-hand_5 10-25 aa PF12763 EH 418-490 aa PF13202 EF-hand_5 425-439 aa

Protein ID	来源	结构域编号	结构域名称	类型	起始 aa	终止 aa	E-value	Score	说明
`XP_057794702.1`	Pfam	`PF12763`	EH	Domain	6	76	3.4e-27	95.0	EH domain
`XP_057794702.1`	Pfam	`PF13202`	EF-hand_5	Domain	10	25	7.7e-09	35.4	EF hand
`XP_057794702.1`	Pfam	`PF12763`	EH	Domain	418	490	3.4e-27	95.0	EH domain
`XP_057794702.1`	Pfam	`PF13202`	EF-hand_5	Domain	425	439	7.7e-09	35.4	EF hand

cDNA / CDS / Protein 序列

下载基因组 DNA（仅基因区域）

每个公开基因均提供参考注释对应的转录本序列；蛋白编码基因另提供 CDS 和蛋白序列。非编码 RNA 不适用 CDS 或蛋白下载。真实 accession 的版本后缀予以保留。

cDNA

1 records

下载 cDNA FASTA

XM_057938719.1
TTACATAAAGGGTAAGTTAAATCTACTGTTCGTTACATCGTCTCTCTCCGATCTCCATCGCACCATCTCGCTTACCTTTCTCCTTCGATCCGTCGTTGAATTCCCCTTTTTTCCCACGAGTTGATTTCAAATTGCCAATTCCGAGTTCTGTTTGAGCTGATTGCGTAGCGAATTTGGAGCTATAGATACCGGTGACAGTGCTTTCGACGGAGTAATGTGGTGATCTAGGGTTTGGAGAAGGGGCAAAAGTAATGGCGGGA...

CDS

1 records

下载 CDS FASTA

LOC131010991
ATGGCGGGAGTAAGTATGGAGAAATTCGAGGAGTATTTCCAAAAGGCGGATGCGGATCGCGACGGCCGGATCAGTGGAGTTGAGGCGGTGGCTTTTCTGCAGGGATCCAATTTGCCTAGACAAGTTCTTGCGCAGATATGGATGCACGCTGACCAAAACCGCACTGGTTTTCTCAGTCGTCCTGAGTTTTATAACGCTCTTAAGCTTGTTACAGTGGCTCAAAGCAAGCGAGAATTGACGCCAGATATTGTTAAGGCAGC...

Protein

1 records

下载 Protein FASTA

XP_057794702.1
MAGVSMEKFEEYFQKADADRDGRISGVEAVAFLQGSNLPRQVLAQIWMHADQNRTGFLSRPEFYNALKLVTVAQSKRELTPDIVKAALYGPASAKIPPPQINVPATPGPQPSPVAASPLTQVGATSQPSSQSLGFRGPAPPSSSFNQQSGTVLSTSGINQQLRPMPSSTGMNQQFGMVPSSTGMNQQYGQVPPGTNMNPQFFPSQGNQMRPPITMPTGPASRPPQAASGLNVSGGMTAAGLPNSNNSWSVGTASVGPATQ...

上下游序列下载

upstream/downstream 最大各 10000 bp。负链基因会自动反向互补，使最终 FASTA 为转录方向 5′→3′。

下载 upstream 下载 downstream 下载 upstream + gene + downstream

JBrowse

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